namespace dhrg {
  double graph_R, graph_alpha, graph_T;
  vector<pair<double, double> > coords;
  
  rogueviz::edgetype *any;
  
  int N;
               
  void fixedges() {
    using namespace rogueviz;
    for(int i=N; i<isize(vdata); i++) if(vdata[i].m) vdata[i].m->dead = true;
    for(int i=0; i<isize(vdata); i++) vdata[i].edges.clear();
    vdata.resize(N);
    for(auto e: edgeinfos) {
      e->orig = NULL;
      addedge(e->i, e->j, e);
      }
    storeall(N);
    }
  
  void tst() {}

  void read_graph(string fn, bool subdiv, bool doRebase, bool doStore) {

    any = rogueviz::add_edgetype("embedded edges");
    rogueviz::fname = fn;
    fhstream f(fn + "-coordinates.txt", "rt");
    if(!f.f) {
      printf("Missing file: %s-coordinates.txt\n", rogueviz::fname.c_str());
      exit(1);
      }
    printf("Reading coordinates...\n");
    string ignore;
    if(!scan(f, ignore, ignore, ignore, ignore, N, graph_R, graph_alpha, graph_T)) {
      printf("Error: incorrect format of the first line\n"); exit(1);
      }
    rogueviz::vdata.reserve(N);
    while(true) {
      string s = scan<string>(f);
      if(s == "D11.11") tst();
      if(s == "" || s == "#ROGUEVIZ_ENDOFDATA") break;
      int id = rogueviz::getid(s);
      rogueviz::vertexdata& vd(rogueviz::vdata[id]);
      vd.name = s;
      vd.cp = rogueviz::colorpair(rogueviz::dftcolor);
      
      double r, alpha;
      if(!scan(f, r, alpha)) { printf("Error: incorrect format of r/alpha\n"); exit(1); }
      coords.push_back(make_pair(r, alpha));
  
      transmatrix h = spin(alpha * degree) * xpush(r);
      
      rogueviz::createViz(id, currentmap->gamestart(), h);
      }
    
    fhstream g(fn + "-links.txt", "rt");
    if(!g.f) {
      println(hlog, "Missing file: ", rogueviz::fname, "-links.txt");
      exit(1);
      }
    println(hlog, "Reading links...");
    int qlink = 0;
    while(true) {
      int i = rogueviz::readLabel(g), j = rogueviz::readLabel(g);
      if(i == -1 || j == -1) break;
      addedge(i, j, 1, subdiv, any);
      qlink++;
      }
  
    if(doRebase) {
      printf("Rebasing...\n");
      for(int i=0; i<isize(rogueviz::vdata); i++) {
        if(i % 10000 == 0) printf("%d/%d\n", i, isize(rogueviz::vdata));
        if(rogueviz::vdata[i].m) virtualRebase(rogueviz::vdata[i].m);
        }
      printf("Done.\n");
      }
    
    if(doStore) rogueviz::storeall();
    }
  
  }