/*!
 * \file hybrid_observables_test.cc
 * \brief  This class implements a tracking test for Galileo_E5a_DLL_PLL_Tracking
 *  implementation based on some input parameters.
 * \author Javier Arribas, 2015. jarribas(at)cttc.es
 *
 *
 * -------------------------------------------------------------------------
 *
 * Copyright (C) 2012-2018  (see AUTHORS file for a list of contributors)
 *
 * GNSS-SDR is a software defined Global Navigation
 *          Satellite Systems receiver
 *
 * This file is part of GNSS-SDR.
 *
 * GNSS-SDR is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * GNSS-SDR is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with GNSS-SDR. If not, see <https://www.gnu.org/licenses/>.
 *
 * -------------------------------------------------------------------------
 */

#include "GPS_L1_CA.h"
#include "GPS_L2C.h"
#include "GPS_L5.h"
#include "Galileo_E1.h"
#include "Galileo_E5a.h"
#include "acquisition_msg_rx.h"
#include "galileo_e1_pcps_ambiguous_acquisition.h"
#include "galileo_e5a_noncoherent_iq_acquisition_caf.h"
#include "galileo_e5a_pcps_acquisition.h"
#include "glonass_l1_ca_pcps_acquisition.h"
#include "glonass_l2_ca_pcps_acquisition.h"
#include "gnss_block_factory.h"
#include "gnss_block_interface.h"
#include "gnss_satellite.h"
#include "gnss_sdr_sample_counter.h"
#include "gnss_synchro.h"
#include "gnuplot_i.h"
#include "gps_l1_ca_dll_pll_tracking.h"
#include "gps_l1_ca_pcps_acquisition.h"
#include "gps_l2_m_pcps_acquisition.h"
#include "gps_l5i_pcps_acquisition.h"
#include "hybrid_observables.h"
#include "in_memory_configuration.h"
#include "observable_tests_flags.h"
#include "observables_dump_reader.h"
#include "signal_generator_flags.h"
#include "telemetry_decoder_interface.h"
#include "test_flags.h"
#include "tlm_dump_reader.h"
#include "tracking_dump_reader.h"
#include "tracking_interface.h"
#include "tracking_tests_flags.h"
#include "tracking_true_obs_reader.h"
#include "true_observables_reader.h"
#include <armadillo>
#include <gnuradio/blocks/file_source.h>
#include <gnuradio/blocks/interleaved_char_to_complex.h>
#include <gnuradio/blocks/null_sink.h>
#include <gnuradio/filter/firdes.h>
#include <gnuradio/top_block.h>
#include <gpstk/Rinex3ObsBase.hpp>
#include <gpstk/Rinex3ObsData.hpp>
#include <gpstk/Rinex3ObsHeader.hpp>
#include <gpstk/Rinex3ObsStream.hpp>
#include <gpstk/RinexUtilities.hpp>
#include <gtest/gtest.h>
#include <matio.h>
#include <chrono>
#include <exception>
#include <unistd.h>
#ifdef GR_GREATER_38
#include <gnuradio/filter/fir_filter_blk.h>
#else
#include <gnuradio/filter/fir_filter_ccf.h>
#endif


// ######## GNURADIO BLOCK MESSAGE RECEVER FOR TRACKING MESSAGES #########
class HybridObservablesTest_msg_rx;

typedef boost::shared_ptr<HybridObservablesTest_msg_rx> HybridObservablesTest_msg_rx_sptr;

HybridObservablesTest_msg_rx_sptr HybridObservablesTest_msg_rx_make();

class HybridObservablesTest_msg_rx : public gr::block
{
private:
    friend HybridObservablesTest_msg_rx_sptr HybridObservablesTest_msg_rx_make();
    void msg_handler_events(pmt::pmt_t msg);
    HybridObservablesTest_msg_rx();

public:
    int rx_message;
    ~HybridObservablesTest_msg_rx();  //!< Default destructor
};

HybridObservablesTest_msg_rx_sptr HybridObservablesTest_msg_rx_make()
{
    return HybridObservablesTest_msg_rx_sptr(new HybridObservablesTest_msg_rx());
}

void HybridObservablesTest_msg_rx::msg_handler_events(pmt::pmt_t msg)
{
    try
        {
            int64_t message = pmt::to_long(msg);
            rx_message = message;
        }
    catch (boost::bad_any_cast& e)
        {
            LOG(WARNING) << "msg_handler_telemetry Bad any cast!";
            rx_message = 0;
        }
}

HybridObservablesTest_msg_rx::HybridObservablesTest_msg_rx() : gr::block("HybridObservablesTest_msg_rx", gr::io_signature::make(0, 0, 0), gr::io_signature::make(0, 0, 0))
{
    this->message_port_register_in(pmt::mp("events"));
    this->set_msg_handler(pmt::mp("events"), boost::bind(&HybridObservablesTest_msg_rx::msg_handler_events, this, _1));
    rx_message = 0;
}

HybridObservablesTest_msg_rx::~HybridObservablesTest_msg_rx()
{
}


// ###########################################################


// ######## GNURADIO BLOCK MESSAGE RECEVER FOR TLM MESSAGES #########
class HybridObservablesTest_tlm_msg_rx;

typedef boost::shared_ptr<HybridObservablesTest_tlm_msg_rx> HybridObservablesTest_tlm_msg_rx_sptr;

HybridObservablesTest_tlm_msg_rx_sptr HybridObservablesTest_tlm_msg_rx_make();

class HybridObservablesTest_tlm_msg_rx : public gr::block
{
private:
    friend HybridObservablesTest_tlm_msg_rx_sptr HybridObservablesTest_tlm_msg_rx_make();
    void msg_handler_events(pmt::pmt_t msg);
    HybridObservablesTest_tlm_msg_rx();

public:
    int rx_message;
    ~HybridObservablesTest_tlm_msg_rx();  //!< Default destructor
};

HybridObservablesTest_tlm_msg_rx_sptr HybridObservablesTest_tlm_msg_rx_make()
{
    return HybridObservablesTest_tlm_msg_rx_sptr(new HybridObservablesTest_tlm_msg_rx());
}

void HybridObservablesTest_tlm_msg_rx::msg_handler_events(pmt::pmt_t msg)
{
    try
        {
            int64_t message = pmt::to_long(msg);
            rx_message = message;
        }
    catch (boost::bad_any_cast& e)
        {
            LOG(WARNING) << "msg_handler_telemetry Bad any cast!";
            rx_message = 0;
        }
}

HybridObservablesTest_tlm_msg_rx::HybridObservablesTest_tlm_msg_rx() : gr::block("HybridObservablesTest_tlm_msg_rx", gr::io_signature::make(0, 0, 0), gr::io_signature::make(0, 0, 0))
{
    this->message_port_register_in(pmt::mp("events"));
    this->set_msg_handler(pmt::mp("events"), boost::bind(&HybridObservablesTest_tlm_msg_rx::msg_handler_events, this, _1));
    rx_message = 0;
}

HybridObservablesTest_tlm_msg_rx::~HybridObservablesTest_tlm_msg_rx()
{
}


// ###########################################################


class HybridObservablesTest : public ::testing::Test
{
public:
    enum StringValue
    {
        evGPS_1C,
        evGPS_2S,
        evGPS_L5,
        evSBAS_1C,
        evGAL_1B,
        evGAL_5X,
        evGLO_1G,
        evGLO_2G
    };
    std::map<std::string, StringValue> mapStringValues_;

    std::string generator_binary;
    std::string p1;
    std::string p2;
    std::string p3;
    std::string p4;
    std::string p5;
    std::string implementation = FLAGS_trk_test_implementation;

    const int baseband_sampling_freq = FLAGS_fs_gen_sps;

    std::string filename_rinex_obs = FLAGS_filename_rinex_obs;
    std::string filename_raw_data = FLAGS_filename_raw_data;

    int configure_generator();
    int generate_signal();
    bool save_mat_xy(std::vector<double>& x, std::vector<double>& y, std::string filename);
    void check_results_carrier_phase(
        arma::mat& true_ch0,
        arma::vec& true_tow_s,
        arma::mat& measured_ch0,
        std::string data_title);
    void check_results_carrier_phase_double_diff(
        arma::mat& true_ch0,
        arma::mat& true_ch1,
        arma::vec& true_tow_ch0_s,
        arma::vec& true_tow_ch1_s,
        arma::mat& measured_ch0,
        arma::mat& measured_ch1,
        std::string data_title);
    void check_results_carrier_doppler(arma::mat& true_ch0,
        arma::vec& true_tow_s,
        arma::mat& measured_ch0,
        std::string data_title);
    void check_results_carrier_doppler_double_diff(
        arma::mat& true_ch0,
        arma::mat& true_ch1,
        arma::vec& true_tow_ch0_s,
        arma::vec& true_tow_ch1_s,
        arma::mat& measured_ch0,
        arma::mat& measured_ch1,
        std::string data_title);
    void check_results_code_pseudorange(
        arma::mat& true_ch0,
        arma::mat& true_ch1,
        arma::vec& true_tow_ch0_s,
        arma::vec& true_tow_ch1_s,
        arma::mat& measured_ch0,
        arma::mat& measured_ch1,
        std::string data_title);

    void check_results_duplicated_satellite(
        arma::mat& measured_sat1,
        arma::mat& measured_sat2,
        int ch_id,
        std::string data_title);

    HybridObservablesTest()
    {
        factory = std::make_shared<GNSSBlockFactory>();
        config = std::make_shared<InMemoryConfiguration>();
        item_size = sizeof(gr_complex);
        mapStringValues_["1C"] = evGPS_1C;
        mapStringValues_["2S"] = evGPS_2S;
        mapStringValues_["L5"] = evGPS_L5;
        mapStringValues_["1B"] = evGAL_1B;
        mapStringValues_["5X"] = evGAL_5X;
        mapStringValues_["1G"] = evGLO_1G;
        mapStringValues_["2G"] = evGLO_2G;
    }

    ~HybridObservablesTest()
    {
    }

    bool ReadRinexObs(std::vector<arma::mat>* obs_vec, Gnss_Synchro gnss);

    bool acquire_signal();
    void configure_receiver(
        double PLL_wide_bw_hz,
        double DLL_wide_bw_hz,
        double PLL_narrow_bw_hz,
        double DLL_narrow_bw_hz,
        int extend_correlation_symbols,
        uint32_t smoother_length,
        bool high_dyn);

    gr::top_block_sptr top_block;
    std::shared_ptr<GNSSBlockFactory> factory;
    std::shared_ptr<InMemoryConfiguration> config;
    Gnss_Synchro gnss_synchro_master;
    std::vector<Gnss_Synchro> gnss_synchro_vec;
    size_t item_size;
};

int HybridObservablesTest::configure_generator()
{
    // Configure signal generator
    generator_binary = FLAGS_generator_binary;

    p1 = std::string("-rinex_nav_file=") + FLAGS_rinex_nav_file;
    if (FLAGS_dynamic_position.empty())
        {
            p2 = std::string("-static_position=") + FLAGS_static_position + std::string(",") + std::to_string(FLAGS_duration * 10);
        }
    else
        {
            p2 = std::string("-obs_pos_file=") + std::string(FLAGS_dynamic_position);
        }
    p3 = std::string("-rinex_obs_file=") + FLAGS_filename_rinex_obs;               // RINEX 2.10 observation file output
    p4 = std::string("-sig_out_file=") + FLAGS_filename_raw_data;                  // Baseband signal output file. Will be stored in int8_t IQ multiplexed samples
    p5 = std::string("-sampling_freq=") + std::to_string(baseband_sampling_freq);  //Baseband sampling frequency [MSps]
    return 0;
}


int HybridObservablesTest::generate_signal()
{
    int child_status;

    char* const parmList[] = {&generator_binary[0], &generator_binary[0], &p1[0], &p2[0], &p3[0], &p4[0], &p5[0], NULL};

    int pid;
    if ((pid = fork()) == -1)
        perror("fork err");
    else if (pid == 0)
        {
            execv(&generator_binary[0], parmList);
            std::cout << "Return not expected. Must be an execv err." << std::endl;
            std::terminate();
        }

    waitpid(pid, &child_status, 0);

    std::cout << "Signal and Observables RINEX and RAW files created." << std::endl;
    return 0;
}


bool HybridObservablesTest::acquire_signal()
{
    // 1. Setup GNU Radio flowgraph (file_source -> Acquisition_10m)
    gr::top_block_sptr top_block;
    top_block = gr::make_top_block("Acquisition test");
    int SV_ID = 1;  //initial sv id
    // Satellite signal definition
    Gnss_Synchro tmp_gnss_synchro;
    tmp_gnss_synchro.Channel_ID = 0;
    config = std::make_shared<InMemoryConfiguration>();
    config->set_property("GNSS-SDR.internal_fs_sps", std::to_string(baseband_sampling_freq));
    // Enable automatic resampler for the acquisition, if required
    if (FLAGS_use_acquisition_resampler == true)
        {
            config->set_property("GNSS-SDR.use_acquisition_resampler", "true");
        }
    config->set_property("Acquisition.blocking_on_standby", "true");
    config->set_property("Acquisition.blocking", "true");
    config->set_property("Acquisition.dump", "false");
    config->set_property("Acquisition.dump_filename", "./data/acquisition.dat");
    config->set_property("Acquisition.use_CFAR_algorithm", "false");

    std::shared_ptr<AcquisitionInterface> acquisition;

    std::string System_and_Signal;
    std::string signal;
    //create the correspondign acquisition block according to the desired tracking signal
    if (implementation.compare("GPS_L1_CA_DLL_PLL_Tracking") == 0)
        {
            tmp_gnss_synchro.System = 'G';
            signal = "1C";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "GPS L1 CA";
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            //acquisition = std::make_shared<GpsL1CaPcpsAcquisitionFineDoppler>(config.get(), "Acquisition", 1, 0);
            acquisition = std::make_shared<GpsL1CaPcpsAcquisition>(config.get(), "Acquisition", 1, 0);
        }
    else if (implementation.compare("Galileo_E1_DLL_PLL_VEML_Tracking") == 0)
        {
            tmp_gnss_synchro.System = 'E';
            signal = "1B";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "Galileo E1B";
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            acquisition = std::make_shared<GalileoE1PcpsAmbiguousAcquisition>(config.get(), "Acquisition", 1, 0);
        }
    else if (implementation.compare("GPS_L2_M_DLL_PLL_Tracking") == 0)
        {
            tmp_gnss_synchro.System = 'G';
            signal = "2S";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "GPS L2CM";
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            acquisition = std::make_shared<GpsL2MPcpsAcquisition>(config.get(), "Acquisition", 1, 0);
        }
    else if (implementation.compare("Galileo_E5a_DLL_PLL_Tracking_b") == 0)
        {
            tmp_gnss_synchro.System = 'E';
            signal = "5X";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "Galileo E5a";
            config->set_property("Acquisition_5X.coherent_integration_time_ms", "1");
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            config->set_property("Acquisition.CAF_window_hz", "0");  //  **Only for E5a** Resolves doppler ambiguity averaging the specified BW in the winner code delay. If set to 0 CAF filter is desactivated. Recommended value 3000 Hz
            config->set_property("Acquisition.Zero_padding", "0");   //**Only for E5a** Avoids power loss and doppler ambiguity in bit transitions by correlating one code with twice the input data length, ensuring that at least one full code is present without transitions. If set to 1 it is ON, if set to 0 it is OFF.
            config->set_property("Acquisition.bit_transition_flag", "false");
            acquisition = std::make_shared<GalileoE5aNoncoherentIQAcquisitionCaf>(config.get(), "Acquisition", 1, 0);
        }

    else if (implementation.compare("Galileo_E5a_DLL_PLL_Tracking") == 0)
        {
            tmp_gnss_synchro.System = 'E';
            signal = "5X";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "Galileo E5a";
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            acquisition = std::make_shared<GalileoE5aPcpsAcquisition>(config.get(), "Acquisition", 1, 0);
        }
    else if (implementation.compare("GPS_L5_DLL_PLL_Tracking") == 0)
        {
            tmp_gnss_synchro.System = 'G';
            signal = "L5";
            const char* str = signal.c_str();                                  // get a C style null terminated string
            std::memcpy(static_cast<void*>(tmp_gnss_synchro.Signal), str, 3);  // copy string into synchro char array: 2 char + null
            tmp_gnss_synchro.PRN = SV_ID;
            System_and_Signal = "GPS L5I";
            config->set_property("Acquisition.max_dwells", std::to_string(FLAGS_external_signal_acquisition_dwells));
            acquisition = std::make_shared<GpsL5iPcpsAcquisition>(config.get(), "Acquisition", 1, 0);
        }
    else
        {
            std::cout << "The test can not run with the selected tracking implementation\n ";
            throw(std::exception());
        }

    acquisition->set_gnss_synchro(&tmp_gnss_synchro);
    acquisition->set_channel(0);
    acquisition->set_doppler_max(config->property("Acquisition.doppler_max", FLAGS_external_signal_acquisition_doppler_max_hz));
    acquisition->set_doppler_step(config->property("Acquisition.doppler_step", FLAGS_external_signal_acquisition_doppler_step_hz));
    acquisition->set_threshold(config->property("Acquisition.threshold", FLAGS_external_signal_acquisition_threshold));
    acquisition->init();
    acquisition->set_local_code();
    acquisition->set_state(1);  // Ensure that acquisition starts at the first sample
    acquisition->connect(top_block);

    gr::blocks::file_source::sptr file_source;
    std::string file = FLAGS_signal_file;
    const char* file_name = file.c_str();
    file_source = gr::blocks::file_source::make(sizeof(int8_t), file_name, false);
    file_source->seek(2 * FLAGS_skip_samples, 0);  //skip head. ibyte, two bytes per complex sample
    gr::blocks::interleaved_char_to_complex::sptr gr_interleaved_char_to_complex = gr::blocks::interleaved_char_to_complex::make();
    //gr::blocks::head::sptr head_samples = gr::blocks::head::make(sizeof(gr_complex), baseband_sampling_freq * FLAGS_duration);
    //top_block->connect(head_samples, 0, acquisition->get_left_block(), 0);

    top_block->connect(file_source, 0, gr_interleaved_char_to_complex, 0);

    // Enable automatic resampler for the acquisition, if required
    if (FLAGS_use_acquisition_resampler == true)
        {
            //create acquisition resamplers if required
            double resampler_ratio = 1.0;

            double opt_fs = baseband_sampling_freq;
            //find the signal associated to this channel
            switch (mapStringValues_[signal])
                {
                case evGPS_1C:
                    opt_fs = GPS_L1_CA_OPT_ACQ_FS_HZ;
                    break;
                case evGPS_2S:
                    opt_fs = GPS_L2C_OPT_ACQ_FS_HZ;
                    break;
                case evGPS_L5:
                    opt_fs = GPS_L5_OPT_ACQ_FS_HZ;
                    break;
                case evSBAS_1C:
                    opt_fs = GPS_L1_CA_OPT_ACQ_FS_HZ;
                    break;
                case evGAL_1B:
                    opt_fs = Galileo_E1_OPT_ACQ_FS_HZ;
                    break;
                case evGAL_5X:
                    opt_fs = Galileo_E5a_OPT_ACQ_FS_HZ;
                    break;
                case evGLO_1G:
                    opt_fs = baseband_sampling_freq;
                    break;
                case evGLO_2G:
                    opt_fs = baseband_sampling_freq;
                    break;
                }
            if (opt_fs < baseband_sampling_freq)
                {
                    resampler_ratio = baseband_sampling_freq / opt_fs;
                    int decimation = floor(resampler_ratio);
                    while (baseband_sampling_freq % decimation > 0)
                        {
                            decimation--;
                        };
                    double acq_fs = baseband_sampling_freq / decimation;

                    if (decimation > 1)
                        {
                            //create a FIR low pass filter
                            std::vector<float> taps;
                            taps = gr::filter::firdes::low_pass(1.0,
                                baseband_sampling_freq,
                                acq_fs / 2.1,
                                acq_fs / 10,
                                gr::filter::firdes::win_type::WIN_HAMMING);
                            std::cout << "Enabled decimation low pass filter with " << taps.size() << " taps and decimation factor of " << decimation << std::endl;
                            acquisition->set_resampler_latency((taps.size() - 1) / 2);
                            gr::basic_block_sptr fir_filter_ccf_ = gr::filter::fir_filter_ccf::make(decimation, taps);
                            top_block->connect(gr_interleaved_char_to_complex, 0, fir_filter_ccf_, 0);
                            top_block->connect(fir_filter_ccf_, 0, acquisition->get_left_block(), 0);
                        }
                    else
                        {
                            std::cout << "Disabled acquisition resampler because the input sampling frequency is too low\n";
                            top_block->connect(gr_interleaved_char_to_complex, 0, acquisition->get_left_block(), 0);
                        }
                }
            else
                {
                    std::cout << "Disabled acquisition resampler because the input sampling frequency is too low\n";
                    top_block->connect(gr_interleaved_char_to_complex, 0, acquisition->get_left_block(), 0);
                }
        }
    else
        {
            top_block->connect(gr_interleaved_char_to_complex, 0, acquisition->get_left_block(), 0);
            //top_block->connect(head_samples, 0, acquisition->get_left_block(), 0);
        }


    boost::shared_ptr<Acquisition_msg_rx> msg_rx;
    try
        {
            msg_rx = Acquisition_msg_rx_make();
        }
    catch (const std::exception& e)
        {
            std::cout << "Failure connecting the message port system: " << e.what() << std::endl;
            exit(0);
        }

    msg_rx->top_block = top_block;
    top_block->msg_connect(acquisition->get_right_block(), pmt::mp("events"), msg_rx, pmt::mp("events"));

    // 5. Run the flowgraph
    // Get visible GPS satellites (positive acquisitions with Doppler measurements)
    // record startup time
    std::chrono::time_point<std::chrono::system_clock> start, end;
    std::chrono::duration<double> elapsed_seconds;
    start = std::chrono::system_clock::now();

    bool start_msg = true;

    unsigned int MAX_PRN_IDX = 0;

    switch (tmp_gnss_synchro.System)
        {
        case 'G':
            MAX_PRN_IDX = 33;
            break;
        case 'E':
            MAX_PRN_IDX = 37;
            break;
        default:
            MAX_PRN_IDX = 33;
        }

    for (unsigned int PRN = 1; PRN < MAX_PRN_IDX; PRN++)
        {
            tmp_gnss_synchro.PRN = PRN;
            acquisition->set_gnss_synchro(&tmp_gnss_synchro);
            acquisition->init();
            acquisition->set_local_code();
            acquisition->reset();
            acquisition->set_state(1);
            msg_rx->rx_message = 0;
            top_block->run();
            if (start_msg == true)
                {
                    std::cout << "Reading external signal file: " << FLAGS_signal_file << std::endl;
                    std::cout << "Searching for " << System_and_Signal << " Satellites..." << std::endl;
                    std::cout << "[";
                    start_msg = false;
                }
            while (msg_rx->rx_message == 0)
                {
                    usleep(100000);
                }
            if (msg_rx->rx_message == 1)
                {
                    std::cout << " " << PRN << " ";
                    gnss_synchro_vec.push_back(tmp_gnss_synchro);
                }
            else
                {
                    std::cout << " . ";
                }
            top_block->stop();
            file_source->seek(2 * FLAGS_skip_samples, 0);  //skip head. ibyte, two bytes per complex sample
            std::cout.flush();
        }
    std::cout << "]" << std::endl;
    std::cout << "-------------------------------------------\n";

    for (auto& x : gnss_synchro_vec)
        {
            std::cout << "DETECTED SATELLITE " << System_and_Signal
                      << " PRN: " << x.PRN
                      << " with Doppler: " << x.Acq_doppler_hz
                      << " [Hz], code phase: " << x.Acq_delay_samples
                      << " [samples] at signal SampleStamp " << x.Acq_samplestamp_samples << "\n";
        }

    // report the elapsed time
    end = std::chrono::system_clock::now();
    elapsed_seconds = end - start;
    std::cout << "Total signal acquisition run time "
              << elapsed_seconds.count()
              << " [seconds]" << std::endl;
    if (gnss_synchro_vec.size() > 0)
        {
            return true;
        }
    else
        {
            return false;
        }
}


void HybridObservablesTest::configure_receiver(
    double PLL_wide_bw_hz,
    double DLL_wide_bw_hz,
    double PLL_narrow_bw_hz,
    double DLL_narrow_bw_hz,
    int extend_correlation_symbols,
    uint32_t smoother_length,
    bool high_dyn)
{
    config = std::make_shared<InMemoryConfiguration>();
    config->set_property("Tracking.dump", "true");
    if (high_dyn)
        config->set_property("Tracking.high_dyn", "true");
    else
        config->set_property("Tracking.high_dyn", "false");
    config->set_property("Tracking.smoother_length", std::to_string(smoother_length));
    config->set_property("Tracking.dump_filename", "./tracking_ch_");
    config->set_property("Tracking.implementation", implementation);
    config->set_property("Tracking.item_type", "gr_complex");
    config->set_property("Tracking.pll_bw_hz", std::to_string(PLL_wide_bw_hz));
    config->set_property("Tracking.dll_bw_hz", std::to_string(DLL_wide_bw_hz));
    config->set_property("Tracking.extend_correlation_symbols", std::to_string(extend_correlation_symbols));
    config->set_property("Tracking.pll_bw_narrow_hz", std::to_string(PLL_narrow_bw_hz));
    config->set_property("Tracking.dll_bw_narrow_hz", std::to_string(DLL_narrow_bw_hz));
    config->set_property("Observables.implementation", "Hybrid_Observables");
    config->set_property("Observables.dump", "true");
    config->set_property("TelemetryDecoder.dump", "true");

    gnss_synchro_master.Channel_ID = 0;
    config->set_property("GNSS-SDR.internal_fs_sps", std::to_string(baseband_sampling_freq));

    std::string System_and_Signal;
    if (implementation.compare("GPS_L1_CA_DLL_PLL_Tracking") == 0)
        {
            gnss_synchro_master.System = 'G';
            std::string signal = "1C";
            System_and_Signal = "GPS L1 CA";
            const char* str = signal.c_str();                                     // get a C style null terminated string
            std::memcpy(static_cast<void*>(gnss_synchro_master.Signal), str, 3);  // copy string into synchro char array: 2 char + null

            config->set_property("Tracking.early_late_space_chips", "0.5");
            config->set_property("Tracking.early_late_space_narrow_chips", "0.5");

            config->set_property("TelemetryDecoder.implementation", "GPS_L1_CA_Telemetry_Decoder");
        }
    else if (implementation.compare("Galileo_E1_DLL_PLL_VEML_Tracking") == 0)
        {
            gnss_synchro_master.System = 'E';
            std::string signal = "1B";
            System_and_Signal = "Galileo E1B";
            const char* str = signal.c_str();                                     // get a C style null terminated string
            std::memcpy(static_cast<void*>(gnss_synchro_master.Signal), str, 3);  // copy string into synchro char array: 2 char + null

            config->set_property("Tracking.early_late_space_chips", "0.15");
            config->set_property("Tracking.very_early_late_space_chips", "0.6");
            config->set_property("Tracking.early_late_space_narrow_chips", "0.15");
            config->set_property("Tracking.very_early_late_space_narrow_chips", "0.6");
            config->set_property("Tracking.track_pilot", "true");

            config->set_property("TelemetryDecoder.implementation", "Galileo_E1B_Telemetry_Decoder");
        }
    else if (implementation.compare("GPS_L2_M_DLL_PLL_Tracking") == 0)
        {
            gnss_synchro_master.System = 'G';
            std::string signal = "2S";
            System_and_Signal = "GPS L2CM";
            const char* str = signal.c_str();                                     // get a C style null terminated string
            std::memcpy(static_cast<void*>(gnss_synchro_master.Signal), str, 3);  // copy string into synchro char array: 2 char + null

            config->set_property("Tracking.early_late_space_chips", "0.5");
            config->set_property("Tracking.track_pilot", "true");

            config->set_property("TelemetryDecoder.implementation", "GPS_L2C_Telemetry_Decoder");
        }
    else if (implementation.compare("Galileo_E5a_DLL_PLL_Tracking") == 0 or implementation.compare("Galileo_E5a_DLL_PLL_Tracking_b") == 0)
        {
            gnss_synchro_master.System = 'E';
            std::string signal = "5X";
            System_and_Signal = "Galileo E5a";
            const char* str = signal.c_str();                                     // get a C style null terminated string
            std::memcpy(static_cast<void*>(gnss_synchro_master.Signal), str, 3);  // copy string into synchro char array: 2 char + null

            if (implementation.compare("Galileo_E5a_DLL_PLL_Tracking_b") == 0)
                {
                    config->supersede_property("Tracking.implementation", std::string("Galileo_E5a_DLL_PLL_Tracking"));
                }
            config->set_property("Tracking.early_late_space_chips", "0.5");
            config->set_property("Tracking.track_pilot", "true");
            config->set_property("Tracking.order", "2");

            config->set_property("TelemetryDecoder.implementation", "Galileo_E5a_Telemetry_Decoder");
        }
    else if (implementation.compare("GPS_L5_DLL_PLL_Tracking") == 0)
        {
            gnss_synchro_master.System = 'G';
            std::string signal = "L5";
            System_and_Signal = "GPS L5I";
            const char* str = signal.c_str();                                     // get a C style null terminated string
            std::memcpy(static_cast<void*>(gnss_synchro_master.Signal), str, 3);  // copy string into synchro char array: 2 char + null

            config->set_property("Tracking.early_late_space_chips", "0.5");
            config->set_property("Tracking.track_pilot", "true");
            config->set_property("Tracking.order", "2");

            config->set_property("TelemetryDecoder.implementation", "GPS_L5_Telemetry_Decoder");
        }
    else
        {
            std::cout << "The test can not run with the selected tracking implementation\n ";
            throw(std::exception());
        }

    std::cout << "*****************************************\n";
    std::cout << "*** Tracking configuration parameters ***\n";
    std::cout << "*****************************************\n";
    std::cout << "Signal: " << System_and_Signal << "\n";
    std::cout << "implementation: " << config->property("Tracking.implementation", std::string("undefined")) << " \n";
    std::cout << "pll_bw_hz: " << config->property("Tracking.pll_bw_hz", 0.0) << " Hz\n";
    std::cout << "dll_bw_hz: " << config->property("Tracking.dll_bw_hz", 0.0) << " Hz\n";
    std::cout << "pll_bw_narrow_hz: " << config->property("Tracking.pll_bw_narrow_hz", 0.0) << " Hz\n";
    std::cout << "dll_bw_narrow_hz: " << config->property("Tracking.dll_bw_narrow_hz", 0.0) << " Hz\n";
    std::cout << "extend_correlation_symbols: " << config->property("Tracking.extend_correlation_symbols", 0) << " Symbols\n";
    std::cout << "high_dyn: " << config->property("Tracking.high_dyn", false) << "\n";
    std::cout << "smoother_length: " << config->property("Tracking.smoother_length", 0) << "\n";
    std::cout << "*****************************************\n";
    std::cout << "*****************************************\n";
}

void HybridObservablesTest::check_results_carrier_phase(
    arma::mat& true_ch0,
    arma::vec& true_tow_s,
    arma::mat& measured_ch0,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    double t0 = measured_ch0(0, 0);
    int size1 = measured_ch0.col(0).n_rows;
    double t1 = measured_ch0(size1 - 1, 0);
    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);

    arma::vec true_ch0_phase_interp;
    arma::interp1(true_tow_s, true_ch0.col(3), t, true_ch0_phase_interp);

    arma::vec meas_ch0_phase_interp;
    arma::interp1(measured_ch0.col(0), measured_ch0.col(3), t, meas_ch0_phase_interp);

    //2. RMSE
    arma::vec err_ch0_cycles;

    //compute error without the accumulated carrier phase offsets (which depends on the receiver starting time)
    err_ch0_cycles = meas_ch0_phase_interp - true_ch0_phase_interp - meas_ch0_phase_interp(0) + true_ch0_phase_interp(0);

    arma::vec err2_ch0 = arma::square(err_ch0_cycles);
    double rmse_ch0 = sqrt(arma::mean(err2_ch0));

    //3. Mean err and variance
    double error_mean_ch0 = arma::mean(err_ch0_cycles);
    double error_var_ch0 = arma::var(err_ch0_cycles);

    // 4. Peaks
    double max_error_ch0 = arma::max(err_ch0_cycles);
    double min_error_ch0 = arma::min(err_ch0_cycles);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << " Accumulated Carrier phase RMSE = "
              << rmse_ch0 << ", mean = " << error_mean_ch0
              << ", stdev = " << sqrt(error_var_ch0)
              << " (max,min) = " << max_error_ch0
              << "," << min_error_ch0
              << " [cycles]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Accumulated Carrier phase error [cycles]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Carrier Phase error [cycles]");
            //conversion between arma::vec and std:vector
            std::vector<double> error_vec(err_ch0_cycles.colptr(0), err_ch0_cycles.colptr(0) + err_ch0_cycles.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, error_vec,
                "Carrier Phase error");
            g3.set_legend();
            g3.savetops(data_title + "Carrier_phase_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    ASSERT_LT(rmse_ch0, 0.25);
    ASSERT_LT(error_mean_ch0, 0.2);
    ASSERT_GT(error_mean_ch0, -0.2);
    ASSERT_LT(error_var_ch0, 0.5);
    ASSERT_LT(max_error_ch0, 0.5);
    ASSERT_GT(min_error_ch0, -0.5);
}


void HybridObservablesTest::check_results_carrier_phase_double_diff(
    arma::mat& true_ch0,
    arma::mat& true_ch1,
    arma::vec& true_tow_ch0_s,
    arma::vec& true_tow_ch1_s,
    arma::mat& measured_ch0,
    arma::mat& measured_ch1,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    double t0 = std::max(measured_ch0(0, 0), measured_ch1(0, 0));
    int size1 = measured_ch0.col(0).n_rows;
    int size2 = measured_ch1.col(0).n_rows;
    double t1 = std::min(measured_ch0(size1 - 1, 0), measured_ch1(size2 - 1, 0));

    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);


    arma::vec true_ch0_carrier_phase_interp;
    arma::vec true_ch1_carrier_phase_interp;
    arma::interp1(true_tow_ch0_s, true_ch0.col(3), t, true_ch0_carrier_phase_interp);
    arma::interp1(true_tow_ch1_s, true_ch1.col(3), t, true_ch1_carrier_phase_interp);

    arma::vec meas_ch0_carrier_phase_interp;
    arma::vec meas_ch1_carrier_phase_interp;
    arma::interp1(measured_ch0.col(0), measured_ch0.col(3), t, meas_ch0_carrier_phase_interp);
    arma::interp1(measured_ch1.col(0), measured_ch1.col(3), t, meas_ch1_carrier_phase_interp);

    // generate double difference accumulated carrier phases
    //compute error without the accumulated carrier phase offsets (which depends on the receiver starting time)
    arma::vec delta_true_carrier_phase_cycles = (true_ch0_carrier_phase_interp - true_ch0_carrier_phase_interp(0)) - (true_ch1_carrier_phase_interp - true_ch1_carrier_phase_interp(0));
    arma::vec delta_measured_carrier_phase_cycles = (meas_ch0_carrier_phase_interp - meas_ch0_carrier_phase_interp(0)) - (meas_ch1_carrier_phase_interp - meas_ch1_carrier_phase_interp(0));

    //2. RMSE
    arma::vec err;

    err = delta_measured_carrier_phase_cycles - delta_true_carrier_phase_cycles;
    arma::vec err2 = arma::square(err);
    double rmse = sqrt(arma::mean(err2));

    //3. Mean err and variance
    double error_mean = arma::mean(err);
    double error_var = arma::var(err);

    // 4. Peaks
    double max_error = arma::max(err);
    double min_error = arma::min(err);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Double diff Carrier Phase RMSE = "
              << rmse << ", mean = " << error_mean
              << ", stdev = " << sqrt(error_var)
              << " (max,min) = " << max_error
              << "," << min_error
              << " [Cycles]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Double diff Carrier Phase error [Cycles]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Double diff Carrier Phase error [Cycles]");
            //conversion between arma::vec and std:vector
            std::vector<double> range_error_m(err.colptr(0), err.colptr(0) + err.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, range_error_m,
                "Double diff Carrier Phase error");
            g3.set_legend();
            g3.savetops(data_title + "double_diff_carrier_phase_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    ASSERT_LT(rmse, 0.25);
    ASSERT_LT(error_mean, 0.2);
    ASSERT_GT(error_mean, -0.2);
    ASSERT_LT(error_var, 0.5);
    ASSERT_LT(max_error, 0.5);
    ASSERT_GT(min_error, -0.5);
}


void HybridObservablesTest::check_results_carrier_doppler_double_diff(
    arma::mat& true_ch0,
    arma::mat& true_ch1,
    arma::vec& true_tow_ch0_s,
    arma::vec& true_tow_ch1_s,
    arma::mat& measured_ch0,
    arma::mat& measured_ch1,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    double t0 = std::max(measured_ch0(0, 0), measured_ch1(0, 0));
    int size1 = measured_ch0.col(0).n_rows;
    int size2 = measured_ch1.col(0).n_rows;
    double t1 = std::min(measured_ch0(size1 - 1, 0), measured_ch1(size2 - 1, 0));

    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);


    arma::vec true_ch0_carrier_doppler_interp;
    arma::vec true_ch1_carrier_doppler_interp;
    arma::interp1(true_tow_ch0_s, true_ch0.col(2), t, true_ch0_carrier_doppler_interp);
    arma::interp1(true_tow_ch1_s, true_ch1.col(2), t, true_ch1_carrier_doppler_interp);

    arma::vec meas_ch0_carrier_doppler_interp;
    arma::vec meas_ch1_carrier_doppler_interp;
    arma::interp1(measured_ch0.col(0), measured_ch0.col(2), t, meas_ch0_carrier_doppler_interp);
    arma::interp1(measured_ch1.col(0), measured_ch1.col(2), t, meas_ch1_carrier_doppler_interp);

    // generate double difference carrier Doppler
    arma::vec delta_true_carrier_doppler_cycles = true_ch0_carrier_doppler_interp - true_ch1_carrier_doppler_interp;
    arma::vec delta_measured_carrier_doppler_cycles = meas_ch0_carrier_doppler_interp - meas_ch1_carrier_doppler_interp;

    //2. RMSE
    arma::vec err;

    err = delta_measured_carrier_doppler_cycles - delta_true_carrier_doppler_cycles;
    arma::vec err2 = arma::square(err);
    double rmse = sqrt(arma::mean(err2));

    //3. Mean err and variance
    double error_mean = arma::mean(err);
    double error_var = arma::var(err);

    // 4. Peaks
    double max_error = arma::max(err);
    double min_error = arma::min(err);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Double diff Carrier Doppler RMSE = "
              << rmse << ", mean = " << error_mean
              << ", stdev = " << sqrt(error_var)
              << " (max,min) = " << max_error
              << "," << min_error
              << " [Hz]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Double diff Carrier Doppler error [Hz]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Double diff Carrier Doppler error [Hz]");
            //conversion between arma::vec and std:vector
            std::vector<double> range_error_m(err.colptr(0), err.colptr(0) + err.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, range_error_m,
                "Double diff Carrier Doppler error");
            g3.set_legend();
            g3.savetops(data_title + "double_diff_carrier_doppler_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    ASSERT_LT(error_mean, 5);
    ASSERT_GT(error_mean, -5);
    //assuming PLL BW=35
    ASSERT_LT(error_var, 250);
    ASSERT_LT(max_error, 100);
    ASSERT_GT(min_error, -100);
    ASSERT_LT(rmse, 30);
}


void HybridObservablesTest::check_results_carrier_doppler(
    arma::mat& true_ch0,
    arma::vec& true_tow_s,
    arma::mat& measured_ch0,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    double t0 = measured_ch0(0, 0);
    int size1 = measured_ch0.col(0).n_rows;
    double t1 = measured_ch0(size1 - 1, 0);
    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);

    arma::vec true_ch0_doppler_interp;
    arma::interp1(true_tow_s, true_ch0.col(2), t, true_ch0_doppler_interp);

    arma::vec meas_ch0_doppler_interp;
    arma::interp1(measured_ch0.col(0), measured_ch0.col(2), t, meas_ch0_doppler_interp);

    //2. RMSE
    arma::vec err_ch0_hz;

    //compute error
    err_ch0_hz = meas_ch0_doppler_interp - true_ch0_doppler_interp;

    arma::vec err2_ch0 = arma::square(err_ch0_hz);
    double rmse_ch0 = sqrt(arma::mean(err2_ch0));

    //3. Mean err and variance
    double error_mean_ch0 = arma::mean(err_ch0_hz);
    double error_var_ch0 = arma::var(err_ch0_hz);

    // 4. Peaks
    double max_error_ch0 = arma::max(err_ch0_hz);
    double min_error_ch0 = arma::min(err_ch0_hz);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Carrier Doppler RMSE = "
              << rmse_ch0 << ", mean = " << error_mean_ch0
              << ", stdev = " << sqrt(error_var_ch0)
              << " (max,min) = " << max_error_ch0
              << "," << min_error_ch0
              << " [Hz]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Carrier Doppler error [Hz]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Carrier Doppler error [Hz]");
            //conversion between arma::vec and std:vector
            std::vector<double> error_vec(err_ch0_hz.colptr(0), err_ch0_hz.colptr(0) + err_ch0_hz.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, error_vec,
                "Carrier Doppler error");
            g3.set_legend();
            g3.savetops(data_title + "Carrier_doppler_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    ASSERT_LT(error_mean_ch0, 5);
    ASSERT_GT(error_mean_ch0, -5);
    //assuming PLL BW=35
    ASSERT_LT(error_var_ch0, 250);
    ASSERT_LT(max_error_ch0, 100);
    ASSERT_GT(min_error_ch0, -100);
    ASSERT_LT(rmse_ch0, 30);
}

void HybridObservablesTest::check_results_duplicated_satellite(
    arma::mat& measured_sat1,
    arma::mat& measured_sat2,
    int ch_id,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    //define the common measured time interval
    double t0_sat1 = measured_sat1(0, 0);
    int size1 = measured_sat1.col(0).n_rows;
    double t1_sat1 = measured_sat1(size1 - 1, 0);

    double t0_sat2 = measured_sat2(0, 0);
    int size2 = measured_sat2.col(0).n_rows;
    double t1_sat2 = measured_sat2(size2 - 1, 0);

    double t0;
    double t1;
    if (t0_sat1 > t0_sat2)
        {
            t0 = t0_sat1;
        }
    else
        {
            t0 = t0_sat2;
        }

    if (t1_sat1 > t1_sat2)
        {
            t1 = t1_sat2;
        }
    else
        {
            t1 = t1_sat1;
        }

    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);
    //Doppler
    arma::vec meas_sat1_doppler_interp;
    arma::interp1(measured_sat1.col(0), measured_sat1.col(2), t, meas_sat1_doppler_interp);
    arma::vec meas_sat2_doppler_interp;
    arma::interp1(measured_sat2.col(0), measured_sat2.col(2), t, meas_sat2_doppler_interp);

    //Carrier Phase
    arma::vec meas_sat1_carrier_phase_interp;
    arma::vec meas_sat2_carrier_phase_interp;
    arma::interp1(measured_sat1.col(0), measured_sat1.col(3), t, meas_sat1_carrier_phase_interp);
    arma::interp1(measured_sat2.col(0), measured_sat2.col(3), t, meas_sat2_carrier_phase_interp);

    // generate double difference accumulated carrier phases
    //compute error without the accumulated carrier phase offsets (which depends on the receiver starting time)
    arma::vec delta_measured_carrier_phase_cycles = (meas_sat1_carrier_phase_interp - meas_sat1_carrier_phase_interp(0)) - (meas_sat2_carrier_phase_interp - meas_sat2_carrier_phase_interp(0));

    //Pseudoranges
    arma::vec meas_sat1_dist_interp;
    arma::vec meas_sat2_dist_interp;
    arma::interp1(measured_sat1.col(0), measured_sat1.col(4), t, meas_sat1_dist_interp);
    arma::interp1(measured_sat2.col(0), measured_sat2.col(4), t, meas_sat2_dist_interp);
    // generate delta pseudoranges
    arma::vec delta_measured_dist_m = meas_sat1_dist_interp - meas_sat2_dist_interp;

    //Carrier Doppler error
    //2. RMSE
    arma::vec err_ch0_hz;

    //compute error
    err_ch0_hz = meas_sat1_doppler_interp - meas_sat2_doppler_interp;

    //save matlab file for further analysis
    std::vector<double> tmp_vector_common_time_s(t.colptr(0),
        t.colptr(0) + t.n_rows);

    std::vector<double> tmp_vector_err_ch0_hz(err_ch0_hz.colptr(0),
        err_ch0_hz.colptr(0) + err_ch0_hz.n_rows);
    save_mat_xy(tmp_vector_common_time_s, tmp_vector_err_ch0_hz, std::string("measured_doppler_error_ch_" + std::to_string(ch_id)));

    //compute statistics
    arma::vec err2_ch0 = arma::square(err_ch0_hz);
    double rmse_ch0 = sqrt(arma::mean(err2_ch0));

    //3. Mean err and variance
    double error_mean_ch0 = arma::mean(err_ch0_hz);
    double error_var_ch0 = arma::var(err_ch0_hz);

    // 4. Peaks
    double max_error_ch0 = arma::max(err_ch0_hz);
    double min_error_ch0 = arma::min(err_ch0_hz);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Carrier Doppler RMSE = "
              << rmse_ch0 << ", mean = " << error_mean_ch0
              << ", stdev = " << sqrt(error_var_ch0)
              << " (max,min) = " << max_error_ch0
              << "," << min_error_ch0
              << " [Hz]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Carrier Doppler error [Hz]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Carrier Doppler error [Hz]");
            //conversion between arma::vec and std:vector
            std::vector<double> error_vec(err_ch0_hz.colptr(0), err_ch0_hz.colptr(0) + err_ch0_hz.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, error_vec,
                "Carrier Doppler error");
            g3.set_legend();
            g3.savetops(data_title + "Carrier_doppler_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    EXPECT_LT(error_mean_ch0, 5);
    EXPECT_GT(error_mean_ch0, -5);
    //assuming PLL BW=35
    EXPECT_LT(error_var_ch0, 250);
    EXPECT_LT(max_error_ch0, 100);
    EXPECT_GT(min_error_ch0, -100);
    EXPECT_LT(rmse_ch0, 30);

    //Carrier Phase error
    //2. RMSE
    arma::vec err_carrier_phase;

    err_carrier_phase = delta_measured_carrier_phase_cycles;

    //save matlab file for further analysis
    std::vector<double> tmp_vector_err_carrier_phase(err_carrier_phase.colptr(0),
        err_carrier_phase.colptr(0) + err_carrier_phase.n_rows);
    save_mat_xy(tmp_vector_common_time_s, tmp_vector_err_carrier_phase, std::string("measured_carrier_phase_error_ch_" + std::to_string(ch_id)));


    arma::vec err2_carrier_phase = arma::square(err_carrier_phase);
    double rmse_carrier_phase = sqrt(arma::mean(err2_carrier_phase));

    //3. Mean err and variance
    double error_mean_carrier_phase = arma::mean(err_carrier_phase);
    double error_var_carrier_phase = arma::var(err_carrier_phase);

    // 4. Peaks
    double max_error_carrier_phase = arma::max(err_carrier_phase);
    double min_error_carrier_phase = arma::min(err_carrier_phase);

    //5. report
    ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Carrier Phase RMSE = "
              << rmse_carrier_phase << ", mean = " << error_mean_carrier_phase
              << ", stdev = " << sqrt(error_var_carrier_phase)
              << " (max,min) = " << max_error_carrier_phase
              << "," << min_error_carrier_phase
              << " [Cycles]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Carrier Phase error [Cycles]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Carrier Phase error [Cycles]");
            //conversion between arma::vec and std:vector
            std::vector<double> range_error_m(err_carrier_phase.colptr(0), err_carrier_phase.colptr(0) + err_carrier_phase.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, range_error_m,
                "Carrier Phase error");
            g3.set_legend();
            g3.savetops(data_title + "duplicated_satellite_carrier_phase_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    EXPECT_LT(rmse_carrier_phase, 0.25);
    EXPECT_LT(error_mean_carrier_phase, 0.2);
    EXPECT_GT(error_mean_carrier_phase, -0.2);
    EXPECT_LT(error_var_carrier_phase, 0.5);
    EXPECT_LT(max_error_carrier_phase, 0.5);
    EXPECT_GT(min_error_carrier_phase, -0.5);

    //Pseudorange error
    //2. RMSE
    arma::vec err_pseudorange;

    err_pseudorange = delta_measured_dist_m;

    //save matlab file for further analysis
    std::vector<double> tmp_vector_err_pseudorange(err_pseudorange.colptr(0),
        err_pseudorange.colptr(0) + err_pseudorange.n_rows);
    save_mat_xy(tmp_vector_common_time_s, tmp_vector_err_pseudorange, std::string("measured_pr_error_ch_" + std::to_string(ch_id)));

    arma::vec err2_pseudorange = arma::square(err_pseudorange);
    double rmse_pseudorange = sqrt(arma::mean(err2_pseudorange));

    //3. Mean err and variance
    double error_mean_pseudorange = arma::mean(err_pseudorange);
    double error_var_pseudorange = arma::var(err_pseudorange);

    // 4. Peaks
    double max_error_pseudorange = arma::max(err_pseudorange);
    double min_error_pseudorange = arma::min(err_pseudorange);

    //5. report
    ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Pseudorange RMSE = "
              << rmse_pseudorange << ", mean = " << error_mean_pseudorange
              << ", stdev = " << sqrt(error_var_pseudorange)
              << " (max,min) = " << max_error_pseudorange
              << "," << min_error_pseudorange
              << " [meters]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Pseudorange error [m]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Pseudorange error [m]");
            //conversion between arma::vec and std:vector
            std::vector<double> range_error_m(err_pseudorange.colptr(0), err_pseudorange.colptr(0) + err_pseudorange.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, range_error_m,
                "Pseudorrange error");
            g3.set_legend();
            g3.savetops(data_title + "duplicated_satellite_pseudorrange_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    EXPECT_LT(rmse_pseudorange, 3.0);
    EXPECT_LT(error_mean_pseudorange, 1.0);
    EXPECT_GT(error_mean_pseudorange, -1.0);
    EXPECT_LT(error_var_pseudorange, 10.0);
    EXPECT_LT(max_error_pseudorange, 10.0);
    EXPECT_GT(min_error_pseudorange, -10.0);
}

bool HybridObservablesTest::save_mat_xy(std::vector<double>& x, std::vector<double>& y, std::string filename)
{
    try
        {
            // WRITE MAT FILE
            mat_t* matfp;
            matvar_t* matvar;
            filename.append(".mat");
            std::cout << "save_mat_xy write " << filename << std::endl;
            matfp = Mat_CreateVer(filename.c_str(), NULL, MAT_FT_MAT5);
            if (reinterpret_cast<int64_t*>(matfp) != NULL)
                {
                    size_t dims[2] = {1, x.size()};
                    matvar = Mat_VarCreate("x", MAT_C_DOUBLE, MAT_T_DOUBLE, 2, dims, &x[0], 0);
                    Mat_VarWrite(matfp, matvar, MAT_COMPRESSION_ZLIB);  // or MAT_COMPRESSION_NONE
                    Mat_VarFree(matvar);

                    matvar = Mat_VarCreate("y", MAT_C_DOUBLE, MAT_T_DOUBLE, 2, dims, &y[0], 0);
                    Mat_VarWrite(matfp, matvar, MAT_COMPRESSION_ZLIB);  // or MAT_COMPRESSION_NONE
                    Mat_VarFree(matvar);
                }
            else
                {
                    std::cout << "save_mat_xy: error creating file" << std::endl;
                }
            Mat_Close(matfp);
            return true;
        }
    catch (const std::exception& ex)
        {
            std::cout << "save_mat_xy: " << ex.what() << std::endl;
            return false;
        }
}

void HybridObservablesTest::check_results_code_pseudorange(
    arma::mat& true_ch0,
    arma::mat& true_ch1,
    arma::vec& true_tow_ch0_s,
    arma::vec& true_tow_ch1_s,
    arma::mat& measured_ch0,
    arma::mat& measured_ch1,
    std::string data_title)
{
    //1. True value interpolation to match the measurement times

    double t0 = std::max(measured_ch0(0, 0), measured_ch1(0, 0));
    int size1 = measured_ch0.col(0).n_rows;
    int size2 = measured_ch1.col(0).n_rows;
    double t1 = std::min(measured_ch0(size1 - 1, 0), measured_ch1(size2 - 1, 0));

    arma::vec t = arma::linspace<arma::vec>(t0, t1, floor((t1 - t0) * 1e3));
    //conversion between arma::vec and std:vector
    arma::vec t_from_start = arma::linspace<arma::vec>(0, t1 - t0, floor((t1 - t0) * 1e3));
    std::vector<double> time_vector(t_from_start.colptr(0), t_from_start.colptr(0) + t_from_start.n_rows);


    arma::vec true_ch0_dist_interp;
    arma::vec true_ch1_dist_interp;
    arma::interp1(true_tow_ch0_s, true_ch0.col(1), t, true_ch0_dist_interp);
    arma::interp1(true_tow_ch1_s, true_ch1.col(1), t, true_ch1_dist_interp);

    arma::vec meas_ch0_dist_interp;
    arma::vec meas_ch1_dist_interp;
    arma::interp1(measured_ch0.col(0), measured_ch0.col(4), t, meas_ch0_dist_interp);
    arma::interp1(measured_ch1.col(0), measured_ch1.col(4), t, meas_ch1_dist_interp);

    // generate delta pseudoranges
    arma::vec delta_true_dist_m = true_ch0_dist_interp - true_ch1_dist_interp;
    arma::vec delta_measured_dist_m = meas_ch0_dist_interp - meas_ch1_dist_interp;

    //2. RMSE
    arma::vec err;

    err = delta_measured_dist_m - delta_true_dist_m;
    arma::vec err2 = arma::square(err);
    double rmse = sqrt(arma::mean(err2));

    //3. Mean err and variance
    double error_mean = arma::mean(err);
    double error_var = arma::var(err);

    // 4. Peaks
    double max_error = arma::max(err);
    double min_error = arma::min(err);

    //5. report
    std::streamsize ss = std::cout.precision();
    std::cout << std::setprecision(10) << data_title << "Double diff Pseudorange RMSE = "
              << rmse << ", mean = " << error_mean
              << ", stdev = " << sqrt(error_var)
              << " (max,min) = " << max_error
              << "," << min_error
              << " [meters]" << std::endl;
    std::cout.precision(ss);

    //plots
    if (FLAGS_show_plots)
        {
            Gnuplot g3("linespoints");
            g3.set_title(data_title + "Double diff Pseudorange error [m]");
            g3.set_grid();
            g3.set_xlabel("Time [s]");
            g3.set_ylabel("Double diff Pseudorange error [m]");
            //conversion between arma::vec and std:vector
            std::vector<double> range_error_m(err.colptr(0), err.colptr(0) + err.n_rows);
            g3.cmd("set key box opaque");
            g3.plot_xy(time_vector, range_error_m,
                "Double diff Pseudorrange error");
            g3.set_legend();
            g3.savetops(data_title + "double_diff_pseudorrange_error");

            g3.showonscreen();  // window output
        }

    //check results against the test tolerance
    ASSERT_LT(rmse, 3.0);
    ASSERT_LT(error_mean, 1.0);
    ASSERT_GT(error_mean, -1.0);
    ASSERT_LT(error_var, 10.0);
    ASSERT_LT(max_error, 10.0);
    ASSERT_GT(min_error, -10.0);
}

bool HybridObservablesTest::ReadRinexObs(std::vector<arma::mat>* obs_vec, Gnss_Synchro gnss)
{
    // Open and read reference RINEX observables file
    try
        {
            gpstk::Rinex3ObsStream r_ref(FLAGS_filename_rinex_obs);
            r_ref.exceptions(std::ios::failbit);
            gpstk::Rinex3ObsData r_ref_data;
            gpstk::Rinex3ObsHeader r_ref_header;

            gpstk::RinexDatum dataobj;

            r_ref >> r_ref_header;

            std::vector<bool> first_row;
            gpstk::SatID prn;
            for (unsigned int n = 0; n < gnss_synchro_vec.size(); n++)
                {
                    first_row.push_back(true);
                    obs_vec->push_back(arma::zeros<arma::mat>(1, 4));
                }
            while (r_ref >> r_ref_data)
                {
                    for (unsigned int n = 0; n < gnss_synchro_vec.size(); n++)
                        {
                            int myprn = gnss_synchro_vec.at(n).PRN;

                            switch (gnss.System)
                                {
                                case 'G':
                                    prn = gpstk::SatID(myprn, gpstk::SatID::systemGPS);
                                    break;
                                case 'E':
                                    prn = gpstk::SatID(myprn, gpstk::SatID::systemGalileo);
                                    break;
                                default:
                                    prn = gpstk::SatID(myprn, gpstk::SatID::systemGPS);
                                }

                            gpstk::CommonTime time = r_ref_data.time;
                            double sow(static_cast<gpstk::GPSWeekSecond>(time).sow);

                            gpstk::Rinex3ObsData::DataMap::iterator pointer = r_ref_data.obs.find(prn);
                            if (pointer == r_ref_data.obs.end())
                                {
                                    // PRN not present; do nothing
                                }
                            else
                                {
                                    if (first_row.at(n) == false)
                                        {
                                            //insert next column
                                            obs_vec->at(n).insert_rows(obs_vec->at(n).n_rows, 1);
                                        }
                                    else
                                        {
                                            first_row.at(n) = false;
                                        }
                                    if (strcmp("1C\0", gnss.Signal) == 0)
                                        {
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 0) = sow;
                                            dataobj = r_ref_data.getObs(prn, "C1C", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 1) = dataobj.data;  //C1C P1 (psudorange L1)
                                            dataobj = r_ref_data.getObs(prn, "D1C", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 2) = dataobj.data;  //D1C Carrier Doppler
                                            dataobj = r_ref_data.getObs(prn, "L1C", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 3) = dataobj.data;  //L1C Carrier Phase
                                        }
                                    else if (strcmp("1B\0", gnss.Signal) == 0)
                                        {
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 0) = sow;
                                            dataobj = r_ref_data.getObs(prn, "C1B", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 1) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "D1B", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 2) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "L1B", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 3) = dataobj.data;
                                        }
                                    else if (strcmp("2S\0", gnss.Signal) == 0)  //L2M
                                        {
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 0) = sow;
                                            dataobj = r_ref_data.getObs(prn, "C2S", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 1) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "D2S", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 2) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "L2S", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 3) = dataobj.data;
                                        }
                                    else if (strcmp("L5\0", gnss.Signal) == 0)
                                        {
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 0) = sow;
                                            dataobj = r_ref_data.getObs(prn, "C5I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 1) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "D5I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 2) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "L5I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 3) = dataobj.data;
                                        }
                                    else if (strcmp("5X\0", gnss.Signal) == 0)  //Simulator gives RINEX with E5a+E5b. Doppler and accumulated Carrier phase WILL differ
                                        {
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 0) = sow;
                                            dataobj = r_ref_data.getObs(prn, "C8I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 1) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "D8I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 2) = dataobj.data;
                                            dataobj = r_ref_data.getObs(prn, "L8I", r_ref_header);
                                            obs_vec->at(n)(obs_vec->at(n).n_rows - 1, 3) = dataobj.data;
                                        }
                                    else
                                        {
                                            std::cout << "ReadRinexObs unknown signal requested: " << gnss.Signal << std::endl;
                                            return false;
                                        }
                                }
                        }
                }  // end while
        }          // End of 'try' block
    catch (const gpstk::FFStreamError& e)
        {
            std::cout << e;
            return false;
        }
    catch (const gpstk::Exception& e)
        {
            std::cout << e;
            return false;
        }
    catch (const std::exception& e)
        {
            std::cout << "Exception: " << e.what();
            std::cout << "unknown error.  I don't feel so well..." << std::endl;
            return false;
        }
    std::cout << "ReadRinexObs info:" << std::endl;
    for (unsigned int n = 0; n < gnss_synchro_vec.size(); n++)
        {
            std::cout << "SAT PRN " << gnss_synchro_vec.at(n).PRN << " RINEX epoch readed: " << obs_vec->at(n).n_rows << std::endl;
        }
    return true;
}
TEST_F(HybridObservablesTest, ValidationOfResults)
{
    // Configure the signal generator
    configure_generator();

    // Generate signal raw signal samples and observations RINEX file
    if (FLAGS_disable_generator == false)
        {
            generate_signal();
        }

    std::chrono::time_point<std::chrono::system_clock> start, end;
    std::chrono::duration<double> elapsed_seconds(0);

    // use generator or use an external capture file
    if (FLAGS_enable_external_signal_file)
        {
            //create and configure an acquisition block and perform an acquisition to obtain the synchronization parameters
            ASSERT_EQ(acquire_signal(), true);
        }
    else
        {
            Gnss_Synchro tmp_gnss_synchro;
            tmp_gnss_synchro.System = 'G';
            std::string signal = "1C";
            signal.copy(tmp_gnss_synchro.Signal, 2, 0);

            std::istringstream ss(FLAGS_test_satellite_PRN_list);
            std::string token;

            while (std::getline(ss, token, ','))
                {
                    tmp_gnss_synchro.PRN = boost::lexical_cast<int>(token);
                    gnss_synchro_vec.push_back(tmp_gnss_synchro);
                }
        }


    configure_receiver(FLAGS_PLL_bw_hz_start,
        FLAGS_DLL_bw_hz_start,
        FLAGS_PLL_narrow_bw_hz,
        FLAGS_DLL_narrow_bw_hz,
        FLAGS_extend_correlation_symbols,
        FLAGS_smoother_length,
        FLAGS_high_dyn);


    for (unsigned int n = 0; n < gnss_synchro_vec.size(); n++)
        {
            //setup the signal synchronization, simulating an acquisition
            if (!FLAGS_enable_external_signal_file)
                {
                    //based on true observables metadata (for custom sdr generator)
                    //open true observables log file written by the simulator or based on provided RINEX obs
                    std::vector<std::shared_ptr<tracking_true_obs_reader>> true_reader_vec;
                    //read true data from the generator logs
                    true_reader_vec.push_back(std::make_shared<tracking_true_obs_reader>());
                    std::cout << "Loading true observable data for PRN " << gnss_synchro_vec.at(n).PRN << std::endl;
                    std::string true_obs_file = std::string("./gps_l1_ca_obs_prn");
                    true_obs_file.append(std::to_string(gnss_synchro_vec.at(n).PRN));
                    true_obs_file.append(".dat");
                    ASSERT_NO_THROW({
                        if (true_reader_vec.back()->open_obs_file(true_obs_file) == false)
                            {
                                throw std::exception();
                            };
                    }) << "Failure opening true observables file";

                    // load acquisition data based on the first epoch of the true observations
                    ASSERT_NO_THROW({
                        if (true_reader_vec.back()->read_binary_obs() == false)
                            {
                                throw std::exception();
                            };
                    }) << "Failure reading true observables file";

                    //restart the epoch counter
                    true_reader_vec.back()->restart();

                    std::cout << "Initial Doppler [Hz]=" << true_reader_vec.back()->doppler_l1_hz << " Initial code delay [Chips]="
                              << true_reader_vec.back()->prn_delay_chips << std::endl;
                    gnss_synchro_vec.at(n).Acq_delay_samples = (GPS_L1_CA_CODE_LENGTH_CHIPS - true_reader_vec.back()->prn_delay_chips / GPS_L1_CA_CODE_LENGTH_CHIPS) * baseband_sampling_freq * GPS_L1_CA_CODE_PERIOD;
                    gnss_synchro_vec.at(n).Acq_doppler_hz = true_reader_vec.back()->doppler_l1_hz;
                    gnss_synchro_vec.at(n).Acq_samplestamp_samples = 0;
                }
            else
                {
                    //based on the signal acquisition process
                    std::cout << "Estimated Initial Doppler " << gnss_synchro_vec.at(n).Acq_doppler_hz
                              << " [Hz], estimated Initial code delay " << gnss_synchro_vec.at(n).Acq_delay_samples << " [Samples]"
                              << " Acquisition SampleStamp is " << gnss_synchro_vec.at(n).Acq_samplestamp_samples << std::endl;
                    gnss_synchro_vec.at(n).Acq_samplestamp_samples = 0;
                }
        }

    std::vector<std::shared_ptr<TrackingInterface>> tracking_ch_vec;
    std::vector<std::shared_ptr<TelemetryDecoderInterface>> tlm_ch_vec;

    std::vector<gr::blocks::null_sink::sptr> null_sink_vec;
    for (unsigned int n = 0; n < gnss_synchro_vec.size(); n++)
        {
            //set channels ids
            gnss_synchro_vec.at(n).Channel_ID = n;

            //create the tracking channels and create the telemetry decoders

            std::shared_ptr<GNSSBlockInterface> trk_ = factory->GetBlock(config, "Tracking", config->property("Tracking.implementation", std::string("undefined")), 1, 1);
            tracking_ch_vec.push_back(std::dynamic_pointer_cast<TrackingInterface>(trk_));
            std::shared_ptr<GNSSBlockInterface> tlm_ = factory->GetBlock(config, "TelemetryDecoder", config->property("TelemetryDecoder.implementation", std::string("undefined")), 1, 1);
            tlm_ch_vec.push_back(std::dynamic_pointer_cast<TelemetryDecoderInterface>(tlm_));

            //create null sinks for observables output
            null_sink_vec.push_back(gr::blocks::null_sink::make(sizeof(Gnss_Synchro)));

            ASSERT_NO_THROW({
                tlm_ch_vec.back()->set_channel(gnss_synchro_vec.at(n).Channel_ID);

                switch (gnss_synchro_master.System)
                    {
                    case 'G':
                        tlm_ch_vec.back()->set_satellite(Gnss_Satellite(std::string("GPS"), gnss_synchro_vec.at(n).PRN));
                        break;
                    case 'E':
                        tlm_ch_vec.back()->set_satellite(Gnss_Satellite(std::string("Galileo"), gnss_synchro_vec.at(n).PRN));
                        break;
                    default:
                        tlm_ch_vec.back()->set_satellite(Gnss_Satellite(std::string("GPS"), gnss_synchro_vec.at(n).PRN));
                    }
            }) << "Failure setting gnss_synchro.";

            ASSERT_NO_THROW({
                tracking_ch_vec.back()->set_channel(gnss_synchro_vec.at(n).Channel_ID);
            }) << "Failure setting channel.";

            ASSERT_NO_THROW({
                tracking_ch_vec.back()->set_gnss_synchro(&gnss_synchro_vec.at(n));
            }) << "Failure setting gnss_synchro.";
        }

    top_block = gr::make_top_block("Telemetry_Decoder test");
    boost::shared_ptr<HybridObservablesTest_msg_rx> dummy_msg_rx_trk = HybridObservablesTest_msg_rx_make();
    boost::shared_ptr<HybridObservablesTest_tlm_msg_rx> dummy_tlm_msg_rx = HybridObservablesTest_tlm_msg_rx_make();
    //Observables
    std::shared_ptr<ObservablesInterface> observables(new HybridObservables(config.get(), "Observables", tracking_ch_vec.size() + 1, tracking_ch_vec.size()));

    for (unsigned int n = 0; n < tracking_ch_vec.size(); n++)
        {
            ASSERT_NO_THROW({
                tracking_ch_vec.at(n)->connect(top_block);
            }) << "Failure connecting tracking to the top_block.";
        }


    ASSERT_NO_THROW({
        std::string file;
        if (!FLAGS_enable_external_signal_file)
            {
                file = "./" + filename_raw_data;
            }
        else
            {
                file = FLAGS_signal_file;
            }
        const char* file_name = file.c_str();
        gr::blocks::file_source::sptr file_source = gr::blocks::file_source::make(sizeof(int8_t), file_name, false);
        gr::blocks::interleaved_char_to_complex::sptr gr_interleaved_char_to_complex = gr::blocks::interleaved_char_to_complex::make();
        int observable_interval_ms = 20;
        gnss_sdr_sample_counter_sptr samp_counter = gnss_sdr_make_sample_counter(static_cast<double>(baseband_sampling_freq), observable_interval_ms, sizeof(gr_complex));
        top_block->connect(file_source, 0, gr_interleaved_char_to_complex, 0);
        top_block->connect(gr_interleaved_char_to_complex, 0, samp_counter, 0);

        for (unsigned int n = 0; n < tracking_ch_vec.size(); n++)
            {
                top_block->connect(gr_interleaved_char_to_complex, 0, tracking_ch_vec.at(n)->get_left_block(), 0);
                top_block->connect(tracking_ch_vec.at(n)->get_right_block(), 0, tlm_ch_vec.at(n)->get_left_block(), 0);
                top_block->connect(tlm_ch_vec.at(n)->get_right_block(), 0, observables->get_left_block(), n);
                top_block->msg_connect(tracking_ch_vec.at(n)->get_right_block(), pmt::mp("events"), dummy_msg_rx_trk, pmt::mp("events"));
                top_block->connect(observables->get_right_block(), n, null_sink_vec.at(n), 0);
            }
        //connect sample counter and timmer to the last channel in observables block (extra channel)
        top_block->connect(samp_counter, 0, observables->get_left_block(), tracking_ch_vec.size());

        file_source->seek(2 * FLAGS_skip_samples, 0);  //skip head. ibyte, two bytes per complex sample
    }) << "Failure connecting the blocks.";

    for (unsigned int n = 0; n < tracking_ch_vec.size(); n++)
        {
            tracking_ch_vec.at(n)->start_tracking();
        }

    EXPECT_NO_THROW({
        start = std::chrono::system_clock::now();
        top_block->run();  // Start threads and wait
        end = std::chrono::system_clock::now();
        elapsed_seconds = end - start;
    }) << "Failure running the top_block.";

    //check results
    // Matrices for storing columnwise true GPS time, Range, Doppler and Carrier phase
    std::vector<arma::mat> true_obs_vec;

    if (!FLAGS_enable_external_signal_file)
        {
            //load the true values
            true_observables_reader true_observables;
            ASSERT_NO_THROW({
                if (true_observables.open_obs_file(std::string("./obs_out.bin")) == false)
                    {
                        throw std::exception();
                    }
            }) << "Failure opening true observables file";

            unsigned int nepoch = static_cast<unsigned int>(true_observables.num_epochs());

            std::cout << "True observation epochs = " << nepoch << std::endl;

            true_observables.restart();
            int64_t epoch_counter = 0;
            for (unsigned int n = 0; n < tracking_ch_vec.size(); n++)
                {
                    true_obs_vec.push_back(arma::zeros<arma::mat>(nepoch, 4));
                }

            ASSERT_NO_THROW({
                while (true_observables.read_binary_obs())
                    {
                        for (unsigned int n = 0; n < true_obs_vec.size(); n++)
                            {
                                if (round(true_observables.prn[n]) != gnss_synchro_vec.at(n).PRN)
                                    {
                                        std::cout << "True observables SV PRN does not match measured ones: "
                                                  << round(true_observables.prn[n]) << " vs. " << gnss_synchro_vec.at(n).PRN << std::endl;
                                        throw std::exception();
                                    }
                                true_obs_vec.at(n)(epoch_counter, 0) = true_observables.gps_time_sec[n];
                                true_obs_vec.at(n)(epoch_counter, 1) = true_observables.dist_m[n];
                                true_obs_vec.at(n)(epoch_counter, 2) = true_observables.doppler_l1_hz[n];
                                true_obs_vec.at(n)(epoch_counter, 3) = true_observables.acc_carrier_phase_l1_cycles[n];
                            }
                        epoch_counter++;
                    }
            });
        }
    else
        {
            if (!FLAGS_duplicated_satellites_test)
                {
                    ASSERT_EQ(ReadRinexObs(&true_obs_vec, gnss_synchro_master), true)
                        << "Failure reading RINEX file";
                }
        }
    //read measured values
    observables_dump_reader estimated_observables(tracking_ch_vec.size());
    ASSERT_NO_THROW({
        if (estimated_observables.open_obs_file(std::string("./observables.dat")) == false)
            {
                throw std::exception();
            }
    }) << "Failure opening dump observables file";

    unsigned int nepoch = static_cast<unsigned int>(estimated_observables.num_epochs());
    std::cout << "Measured observations epochs = " << nepoch << std::endl;

    // Matrices for storing columnwise measured RX_time, TOW, Doppler, Carrier phase and Pseudorange
    std::vector<arma::mat> measured_obs_vec;
    std::vector<int64_t> epoch_counters_vec;
    for (unsigned int n = 0; n < tracking_ch_vec.size(); n++)
        {
            measured_obs_vec.push_back(arma::zeros<arma::mat>(nepoch, 5));
            epoch_counters_vec.push_back(0);
        }

    estimated_observables.restart();
    while (estimated_observables.read_binary_obs())
        {
            for (unsigned int n = 0; n < measured_obs_vec.size(); n++)
                {
                    if (static_cast<bool>(estimated_observables.valid[n]))
                        {
                            measured_obs_vec.at(n)(epoch_counters_vec.at(n), 0) = estimated_observables.RX_time[n];
                            measured_obs_vec.at(n)(epoch_counters_vec.at(n), 1) = estimated_observables.TOW_at_current_symbol_s[n];
                            measured_obs_vec.at(n)(epoch_counters_vec.at(n), 2) = estimated_observables.Carrier_Doppler_hz[n];
                            measured_obs_vec.at(n)(epoch_counters_vec.at(n), 3) = estimated_observables.Acc_carrier_phase_hz[n];
                            measured_obs_vec.at(n)(epoch_counters_vec.at(n), 4) = estimated_observables.Pseudorange_m[n];
                            epoch_counters_vec.at(n)++;
                        }
                }
        }

    //Cut measurement tail zeros
    arma::uvec index;
    for (unsigned int n = 0; n < measured_obs_vec.size(); n++)
        {
            index = arma::find(measured_obs_vec.at(n).col(0) > 0.0, 1, "last");
            if ((index.size() > 0) and index(0) < (nepoch - 1))
                {
                    measured_obs_vec.at(n).shed_rows(index(0) + 1, nepoch - 1);
                }
        }

    //Cut measurement initial transitory of the measurements
    double initial_transitory_s = FLAGS_skip_obs_transitory_s;
    for (unsigned int n = 0; n < measured_obs_vec.size(); n++)
        {
            index = arma::find(measured_obs_vec.at(n).col(0) >= (measured_obs_vec.at(n)(0, 0) + initial_transitory_s), 1, "first");
            if ((index.size() > 0) and (index(0) > 0))
                {
                    measured_obs_vec.at(n).shed_rows(0, index(0));
                }

            if (!FLAGS_duplicated_satellites_test)
                {
                    index = arma::find(measured_obs_vec.at(n).col(0) >= true_obs_vec.at(n)(0, 0), 1, "first");
                    if ((index.size() > 0) and (index(0) > 0))
                        {
                            measured_obs_vec.at(n).shed_rows(0, index(0));
                        }
                }
        }


    if (FLAGS_duplicated_satellites_test)
        {
            //special test mode for duplicated satellites
            std::vector<unsigned int> prn_pairs;
            std::stringstream ss(FLAGS_duplicated_satellites_prns);
            unsigned int i;
            while (ss >> i)
                {
                    prn_pairs.push_back(i);
                    if (ss.peek() == ',')
                        ss.ignore();
                }

            if (prn_pairs.size() % 2 != 0)
                {
                    std::cout << "Test settings error: duplicated_satellites_prns are even\n";
                }
            else
                {
                    for (unsigned int n = 0; n < prn_pairs.size(); n = n + 2)
                        {
                            int sat1_ch_id = -1;
                            int sat2_ch_id = -1;
                            for (unsigned int ch = 0; ch < measured_obs_vec.size(); ch++)
                                {
                                    if (epoch_counters_vec.at(ch) > 10)  //discard non-valid channels
                                        {
                                            if (gnss_synchro_vec.at(ch).PRN == prn_pairs.at(n))
                                                {
                                                    sat1_ch_id = ch;
                                                }
                                            if (gnss_synchro_vec.at(ch).PRN == prn_pairs.at(n + 1))
                                                {
                                                    sat2_ch_id = ch;
                                                }
                                        }
                                }
                            if (sat1_ch_id != -1 and sat2_ch_id != -1)
                                {
                                    //compute single differences for the duplicated satellite

                                    check_results_duplicated_satellite(
                                        measured_obs_vec.at(sat1_ch_id),
                                        measured_obs_vec.at(sat2_ch_id),
                                        sat1_ch_id,
                                        "Duplicated sat [CH " + std::to_string(sat1_ch_id) + "," + std::to_string(sat2_ch_id) + "] PRNs " + std::to_string(gnss_synchro_vec.at(sat1_ch_id).PRN) + "," + std::to_string(gnss_synchro_vec.at(sat2_ch_id).PRN) + " ");
                                }
                            else
                                {
                                    std::cout << "Satellites PRNs " << prn_pairs.at(n) << "and " << prn_pairs.at(n) << " not found\n";
                                }
                        }
                }
        }
    else
        {
            //normal mode

            //Correct the clock error using true values (it is not possible for a receiver to correct
            //the receiver clock offset error at the observables level because it is required the
            //decoding of the ephemeris data and solve the PVT equations)

            //Find the reference satellite (the nearest) and compute the receiver time offset at observable level
            double min_pr = std::numeric_limits<double>::max();
            unsigned int min_pr_ch_id = 0;
            for (unsigned int n = 0; n < measured_obs_vec.size(); n++)
                {
                    if (epoch_counters_vec.at(n) > 10)  //discard non-valid channels
                        {
                            {
                                if (measured_obs_vec.at(n)(0, 4) < min_pr)
                                    {
                                        min_pr = measured_obs_vec.at(n)(0, 4);
                                        min_pr_ch_id = n;
                                    }
                            }
                        }
                    else
                        {
                            std::cout << "PRN " << gnss_synchro_vec.at(n).PRN << " has NO observations!\n";
                        }
                }

            arma::vec receiver_time_offset_ref_channel_s;
            receiver_time_offset_ref_channel_s = (true_obs_vec.at(min_pr_ch_id).col(1)(0) - measured_obs_vec.at(min_pr_ch_id).col(4)(0)) / GPS_C_m_s;
            std::cout << "Ref. channel initial Receiver time offset " << receiver_time_offset_ref_channel_s(0) * 1e3 << " [ms]" << std::endl;

            for (unsigned int n = 0; n < measured_obs_vec.size(); n++)
                {
                    //debug save to .mat
                    std::vector<double> tmp_vector_x(true_obs_vec.at(n).col(0).colptr(0),
                        true_obs_vec.at(n).col(0).colptr(0) + true_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y(true_obs_vec.at(n).col(1).colptr(0),
                        true_obs_vec.at(n).col(1).colptr(0) + true_obs_vec.at(n).col(1).n_rows);
                    save_mat_xy(tmp_vector_x, tmp_vector_y, std::string("true_pr_ch_" + std::to_string(n)));

                    std::vector<double> tmp_vector_x2(measured_obs_vec.at(n).col(0).colptr(0),
                        measured_obs_vec.at(n).col(0).colptr(0) + measured_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y2(measured_obs_vec.at(n).col(4).colptr(0),
                        measured_obs_vec.at(n).col(4).colptr(0) + measured_obs_vec.at(n).col(4).n_rows);
                    save_mat_xy(tmp_vector_x2, tmp_vector_y2, std::string("measured_pr_ch_" + std::to_string(n)));

                    std::vector<double> tmp_vector_x3(true_obs_vec.at(n).col(0).colptr(0),
                        true_obs_vec.at(n).col(0).colptr(0) + true_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y3(true_obs_vec.at(n).col(2).colptr(0),
                        true_obs_vec.at(n).col(2).colptr(0) + true_obs_vec.at(n).col(2).n_rows);
                    save_mat_xy(tmp_vector_x3, tmp_vector_y3, std::string("true_doppler_ch_" + std::to_string(n)));

                    std::vector<double> tmp_vector_x4(measured_obs_vec.at(n).col(0).colptr(0),
                        measured_obs_vec.at(n).col(0).colptr(0) + measured_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y4(measured_obs_vec.at(n).col(2).colptr(0),
                        measured_obs_vec.at(n).col(2).colptr(0) + measured_obs_vec.at(n).col(2).n_rows);
                    save_mat_xy(tmp_vector_x4, tmp_vector_y4, std::string("measured_doppler_ch_" + std::to_string(n)));

                    std::vector<double> tmp_vector_x5(true_obs_vec.at(n).col(0).colptr(0),
                        true_obs_vec.at(n).col(0).colptr(0) + true_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y5(true_obs_vec.at(n).col(3).colptr(0),
                        true_obs_vec.at(n).col(3).colptr(0) + true_obs_vec.at(n).col(3).n_rows);
                    save_mat_xy(tmp_vector_x5, tmp_vector_y5, std::string("true_cp_ch_" + std::to_string(n)));

                    std::vector<double> tmp_vector_x6(measured_obs_vec.at(n).col(0).colptr(0),
                        measured_obs_vec.at(n).col(0).colptr(0) + measured_obs_vec.at(n).col(0).n_rows);
                    std::vector<double> tmp_vector_y6(measured_obs_vec.at(n).col(3).colptr(0),
                        measured_obs_vec.at(n).col(3).colptr(0) + measured_obs_vec.at(n).col(3).n_rows);
                    save_mat_xy(tmp_vector_x6, tmp_vector_y6, std::string("measured_cp_ch_" + std::to_string(n)));


                    if (epoch_counters_vec.at(n) > 10)  //discard non-valid channels
                        {
                            arma::vec true_TOW_ref_ch_s = true_obs_vec.at(min_pr_ch_id).col(0) - receiver_time_offset_ref_channel_s(0);
                            arma::vec true_TOW_ch_s = true_obs_vec.at(n).col(0) - receiver_time_offset_ref_channel_s(0);
                            //Compare measured observables
                            if (min_pr_ch_id != n)
                                {
                                    check_results_code_pseudorange(true_obs_vec.at(n),
                                        true_obs_vec.at(min_pr_ch_id),
                                        true_TOW_ch_s,
                                        true_TOW_ref_ch_s,
                                        measured_obs_vec.at(n),
                                        measured_obs_vec.at(min_pr_ch_id),
                                        "[CH " + std::to_string(n) + "] PRN " + std::to_string(gnss_synchro_vec.at(n).PRN) + " ");

                                    //Do not compare E5a with E5 RINEX due to the Doppler frequency discrepancy caused by the different center frequencies
                                    //E5a_fc=1176.45e6, E5b_fc=1207.14e6, E5_fc=1191.795e6;
                                    if (strcmp("5X\0", gnss_synchro_vec.at(n).Signal) != 0 or FLAGS_compare_with_5X)
                                        {
                                            check_results_carrier_phase_double_diff(true_obs_vec.at(n),
                                                true_obs_vec.at(min_pr_ch_id),
                                                true_TOW_ch_s,
                                                true_TOW_ref_ch_s,
                                                measured_obs_vec.at(n),
                                                measured_obs_vec.at(min_pr_ch_id),
                                                "[CH " + std::to_string(n) + "] PRN " + std::to_string(gnss_synchro_vec.at(n).PRN) + " ");

                                            check_results_carrier_doppler_double_diff(true_obs_vec.at(n),
                                                true_obs_vec.at(min_pr_ch_id),
                                                true_TOW_ch_s,
                                                true_TOW_ref_ch_s,
                                                measured_obs_vec.at(n),
                                                measured_obs_vec.at(min_pr_ch_id),
                                                "[CH " + std::to_string(n) + "] PRN " + std::to_string(gnss_synchro_vec.at(n).PRN) + " ");
                                        }
                                }
                            else
                                {
                                    std::cout << "[CH " << std::to_string(n) << "] PRN " << std::to_string(gnss_synchro_vec.at(n).PRN) << " is the reference satellite" << std::endl;
                                }
                            if (FLAGS_compute_single_diffs)
                                {
                                    check_results_carrier_phase(true_obs_vec.at(n),
                                        true_TOW_ch_s,
                                        measured_obs_vec.at(n),
                                        "[CH " + std::to_string(n) + "] PRN " + std::to_string(gnss_synchro_vec.at(n).PRN) + " ");
                                    check_results_carrier_doppler(true_obs_vec.at(n),
                                        true_TOW_ch_s,
                                        measured_obs_vec.at(n),
                                        "[CH " + std::to_string(n) + "] PRN " + std::to_string(gnss_synchro_vec.at(n).PRN) + " ");
                                }
                        }
                    else
                        {
                            std::cout << "PRN " << gnss_synchro_vec.at(n).PRN << " has NO observations!\n";
                        }
                }
        }
    std::cout << "Test completed in " << elapsed_seconds.count() << " [s]" << std::endl;
}
