Created the first draft.

app/src/main/java/org/schabi/newpipe/database/playlist/dao/PlaylistStreamDAO.java

@@ -83,4 +83,15 @@ public interface PlaylistStreamDAO extends BasicDAO<PlaylistStreamEntity> {
             + " GROUP BY " + JOIN_PLAYLIST_ID
             + " ORDER BY " + PLAYLIST_NAME + " COLLATE NOCASE ASC")
     Flowable<List<PlaylistMetadataEntry>> getPlaylistMetadata();
+
+    @Transaction
+    @Query("DELETE FROM " + PLAYLIST_STREAM_JOIN_TABLE
+            + " WHERE " + JOIN_PLAYLIST_ID + "=:playlistId"
+            + " AND " + JOIN_STREAM_ID + " IN ("
+            + " SELECT " + JOIN_STREAM_ID
+            + " FROM " + PLAYLIST_STREAM_JOIN_TABLE
+            + " WHERE " + JOIN_PLAYLIST_ID + "=:playlistId"
+            + " GROUP BY " + JOIN_STREAM_ID
+            + " HAVING COUNT(*) > 1 )" )
+    Flowable<List<PlaylistMetadataEntry>> removeDuplicates(long playlistId);
 }

app/src/main/java/org/schabi/newpipe/local/playlist/LocalPlaylistFragment.java

@@ -367,6 +367,8 @@ public class LocalPlaylistFragment extends BaseLocalListFragment<List<PlaylistSt
                         .create()
                         .show();
             }
+        } else if (item.getItemId() == R.id.menu_item_remove_duplicates) {
+            openRemoveDuplicatesDialog();
         } else {
             return super.onOptionsItemSelected(item);
         }
@@ -621,6 +623,24 @@ public class LocalPlaylistFragment extends BaseLocalListFragment<List<PlaylistSt
         changeThumbnailUrl(newThumbnailUrl);
     }
 
+
+    private void openRemoveDuplicatesDialog() {
+        final AlertDialog.Builder builder = new AlertDialog.Builder(this.getActivity());
+
+        builder.setTitle("R.string.duplicate_stream_in_playlist_title")
+                .setMessage("test")
+                .setPositiveButton(android.R.string.yes, (dialog, i) -> {
+                    removeDuplicatesInPlaylist();
+                })
+                .setNeutralButton(R.string.cancel, null);
+
+        builder.create().show();
+    }
+
+    private void removeDuplicatesInPlaylist() {
+
+    }
+
     private void deleteItem(final PlaylistStreamEntry item) {
         if (itemListAdapter == null) {
             return;

app/src/main/java/org/schabi/newpipe/local/playlist/LocalPlaylistManager.java

@@ -86,6 +86,12 @@ public class LocalPlaylistManager {
         return playlistStreamTable.getPlaylistMetadata().subscribeOn(Schedulers.io());
     }
 
+    public Flowable<List<PlaylistMetadataEntry>> removeDuplicateStreams() {
+        // TODO: Delete Duplicates and rebuild the index
+        // TODO: Rebuild the index
+        return playlistStreamTable.getPlaylistMetadata().subscribeOn(Schedulers.io());
+    }
+
     public Flowable<List<PlaylistStreamEntry>> getPlaylistStreams(final long playlistId) {
         return playlistStreamTable.getOrderedStreamsOf(playlistId).subscribeOn(Schedulers.io());
     }