In no particular order:
bios.lua - added missing test for ensure turtle folder exists.
paintutils.lua - added drawLineHorizontal() to reduce most (not all) cases of running multiple writes on same horizontal line that can be solved with one write.
textutils.lua - Added exception to complete function - will not complete if provided with LuaKeyword - solves do->dofile problem and removes other LuaKeyword related ones in advance.
edit.lua - Changed logic in handling the paste event - if paste event is received when menu is open it automatically closed said menu and lets it paste - resolves ctrl+ctrl+v annoyance. Added Jump to Menu functions - allows for fast jump to needed line - must for bigger files and a nice feature to have.
set.lua - Switched set to use pagedPrint - this will ensure that even if there are more settings than lines on screen the set command will show you all of them.
startup.lua - Added autocompletition for turtle programs go, turn, equip, unequip and command program exec.
lua.lua - Changed return function to print returned stuff correctly -
will print all returned variables even if there are any nils in there.