diff --git a/doc/styles.css b/doc/styles.css
index ef14a7d94..436a8c535 100644
--- a/doc/styles.css
+++ b/doc/styles.css
@@ -23,7 +23,7 @@ body {
                  "Droid Sans", "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol";
 }
 
-code, pre, .parameter, .type, .definition-name, .reference {
+code, pre, .parameter, .type, .definition-name, .reference-code {
     font-family: "SFMono-Regular", Consolas, "Liberation Mono", Menlo, Courier, monospace;
 }
 
diff --git a/illuaminate.sexp b/illuaminate.sexp
index f727a3a8e..32acc06de 100644
--- a/illuaminate.sexp
+++ b/illuaminate.sexp
@@ -2,8 +2,8 @@
 
 (sources
   /doc/stub/
-  /src/main/resources/assets/computercraft/lua/bios.lua
-  /src/main/resources/assets/computercraft/lua/rom/
+  /src/main/resources/*/computercraft/lua/bios.lua
+  /src/main/resources/*/computercraft/lua/rom/
   /src/test/resources/test-rom)
 
 
@@ -15,13 +15,13 @@
   (library-path
     /doc/stub/
 
-    /src/main/resources/assets/computercraft/lua/rom/apis
-    /src/main/resources/assets/computercraft/lua/rom/apis/command
-    /src/main/resources/assets/computercraft/lua/rom/apis/turtle
+    /src/main/resources/*/computercraft/lua/rom/apis
+    /src/main/resources/*/computercraft/lua/rom/apis/command
+    /src/main/resources/*/computercraft/lua/rom/apis/turtle
 
-    /src/main/resources/assets/computercraft/lua/rom/modules/main
-    /src/main/resources/assets/computercraft/lua/rom/modules/command
-    /src/main/resources/assets/computercraft/lua/rom/modules/turtle))
+    /src/main/resources/*/computercraft/lua/rom/modules/main
+    /src/main/resources/*/computercraft/lua/rom/modules/command
+    /src/main/resources/*/computercraft/lua/rom/modules/turtle))
 
 (at /
   (linters
@@ -35,9 +35,7 @@
     ;; be good to find a compromise in the future, but this works for now.
     -var:unused-arg
 
-    ;; Suppress a couple of documentation comments warnings for now. We'll
-    ;; hopefully be able to remove them in the future.
-    -doc:undocumented -doc:undocumented-arg -doc:unresolved-reference
+    ;; Some APIS (keys, colour and os mainly) are incomplete right now.
     -var:unresolved-member)
   (lint
     (bracket-spaces
@@ -50,8 +48,8 @@
 ;; We disable the unused global linter in bios.lua and the APIs. In the future
 ;; hopefully we'll get illuaminate to handle this.
 (at
-  (/src/main/resources/assets/computercraft/lua/bios.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/)
+  (/src/main/resources/*/computercraft/lua/bios.lua
+   /src/main/resources/*/computercraft/lua/rom/apis/)
   (linters -var:unused-global)
   (lint (allow-toplevel-global true)))
 
@@ -60,19 +58,27 @@
   (linters -var:unused-global)
   (lint (allow-toplevel-global true)))
 
-;; Ensure any fully documented modules stay fully documented.
+;; Suppress warnings for currently undocumented modules.
 (at
-  (/src/main/resources/assets/computercraft/lua/rom/apis/colors.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/colours.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/disk.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/gps.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/help.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/keys.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/paintutils.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/parallel.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/peripheral.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/rednet.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/settings.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/texutils.lua
-   /src/main/resources/assets/computercraft/lua/rom/apis/vector.lua)
-  (linters doc:undocumented doc:undocumented-arg))
+  (/doc/stub/commands.lua
+   /doc/stub/fs.lua
+   /doc/stub/http.lua
+   /doc/stub/os.lua
+   /doc/stub/redstone.lua
+   /doc/stub/term.lua
+   /doc/stub/turtle.lua
+   /src/main/resources/*/computercraft/lua/rom/apis/command/commands.lua
+   /src/main/resources/*/computercraft/lua/rom/apis/io.lua
+   /src/main/resources/*/computercraft/lua/rom/apis/window.lua
+   /src/main/resources/*/computercraft/lua/rom/modules/main/cc/shell/completion.lua)
+
+  (linters -doc:undocumented -doc:undocumented-arg))
+
+;; These currently rely on unknown references.
+(at
+  (/src/main/resources/*/computercraft/lua/rom/apis/textutils.lua
+   /src/main/resources/*/computercraft/lua/rom/modules/main/cc/completion.lua
+   /src/main/resources/*/computercraft/lua/rom/modules/main/cc/shell/completion.lua
+   /src/main/resources/*/computercraft/lua/rom/programs/advanced/multishell.lua
+   /src/main/resources/*/computercraft/lua/rom/programs/shell.lua)
+  (linters -doc:unresolved-reference))
diff --git a/src/main/resources/assets/computercraft/lua/bios.lua b/src/main/resources/assets/computercraft/lua/bios.lua
index f1e80cef4..a2f737416 100644
--- a/src/main/resources/assets/computercraft/lua/bios.lua
+++ b/src/main/resources/assets/computercraft/lua/bios.lua
@@ -521,14 +521,11 @@ function os.run(_tEnv, _sPath, ...)
     expect(1, _tEnv, "table")
     expect(2, _sPath, "string")
 
-    local tArgs = table.pack(...)
     local tEnv = _tEnv
     setmetatable(tEnv, { __index = _G })
     local fnFile, err = loadfile(_sPath, nil, tEnv)
     if fnFile then
-        local ok, err = pcall(function()
-            fnFile(table.unpack(tArgs, 1, tArgs.n))
-        end)
+        local ok, err = pcall(fnFile, ...)
         if not ok then
             if err and err ~= "" then
                 printError(err)
diff --git a/src/main/resources/assets/computercraft/lua/rom/apis/disk.lua b/src/main/resources/assets/computercraft/lua/rom/apis/disk.lua
index fcc907121..9e136b22c 100644
--- a/src/main/resources/assets/computercraft/lua/rom/apis/disk.lua
+++ b/src/main/resources/assets/computercraft/lua/rom/apis/disk.lua
@@ -106,7 +106,7 @@ end
 -- This generally returns the same as @{disk.getLabel} for records.
 --
 -- @tparam string name The name of the disk drive.
--- @treturn string|false|nil The track title, `false` if there is not a music
+-- @treturn string|false|nil The track title, @{false} if there is not a music
 -- record in the drive or `nil` if no drive is present.
 function getAudioTitle(name)
     if isDrive(name) then
diff --git a/src/main/resources/assets/computercraft/lua/rom/apis/settings.lua b/src/main/resources/assets/computercraft/lua/rom/apis/settings.lua
index c1fcb45f6..f9925d36f 100644
--- a/src/main/resources/assets/computercraft/lua/rom/apis/settings.lua
+++ b/src/main/resources/assets/computercraft/lua/rom/apis/settings.lua
@@ -32,7 +32,7 @@ for _, v in ipairs(valid_types) do valid_types[v] = true end
 -- you to provide defaults and additional metadata.
 --
 -- @tparam string name The name of this option
--- @tparam[opt] { description? = string, default? = value, type? = string } options
+-- @tparam[opt] { description? = string, default? = any, type? = string } options
 -- Options for this setting. This table accepts the following fields:
 --
 --  - `description`: A description which may be printed when running the `set` program.
@@ -127,7 +127,7 @@ end
 --- Get details about a specific setting.
 --
 -- @tparam string name The name of the setting to get.
--- @treturn { description? = string, default? = value, type? = string, value? = value }
+-- @treturn { description? = string, default? = any, type? = string, value? = any }
 -- Information about this setting. This includes all information from @{settings.define},
 -- as well as this setting's value.
 function getDetails(name)
diff --git a/src/main/resources/assets/computercraft/lua/rom/modules/main/cc/shell/completion.lua b/src/main/resources/assets/computercraft/lua/rom/modules/main/cc/shell/completion.lua
index d89c72a91..6be54fe2f 100644
--- a/src/main/resources/assets/computercraft/lua/rom/modules/main/cc/shell/completion.lua
+++ b/src/main/resources/assets/computercraft/lua/rom/modules/main/cc/shell/completion.lua
@@ -16,7 +16,7 @@ local completion = require "cc.completion"
 
 --- Complete the name of a file relative to the current working directory.
 --
--- @tparam shell shell The shell we're completing in
+-- @tparam table shell The shell we're completing in
 -- @tparam { string... } choices The list of choices to complete from.
 -- @treturn { string... } A list of suffixes of matching files.
 local function file(shell, text)
@@ -25,7 +25,7 @@ end
 
 --- Complete the name of a directory relative to the current working directory.
 --
--- @tparam shell shell The shell we're completing in
+-- @tparam table shell The shell we're completing in
 -- @tparam { string... } choices The list of choices to complete from.
 -- @treturn { string... } A list of suffixes of matching directories.
 local function dir(shell, text)
@@ -35,7 +35,7 @@ end
 --- Complete the name of a file or directory relative to the current working
 -- directory.
 --
--- @tparam shell shell The shell we're completing in
+-- @tparam table shell The shell we're completing in
 -- @tparam { string... } choices The list of choices to complete from.
 -- @tparam { string... } previous The shell arguments before this one.
 -- @tparam[opt] boolean add_space Whether to add a space after the completed item.
@@ -61,9 +61,10 @@ end
 
 --- Complete the name of a program.
 --
--- @tparam shell shell The shell we're completing in
+-- @tparam table shell The shell we're completing in
 -- @tparam { string... } choices The list of choices to complete from.
 -- @treturn { string... } A list of suffixes of matching programs.
+-- @see shell.completeProgram
 local function program(shell, text)
     return shell.completeProgram(text)
 end
diff --git a/src/main/resources/assets/computercraft/lua/rom/programs/advanced/multishell.lua b/src/main/resources/assets/computercraft/lua/rom/programs/advanced/multishell.lua
index c675f2dc6..1ff73ab9f 100644
--- a/src/main/resources/assets/computercraft/lua/rom/programs/advanced/multishell.lua
+++ b/src/main/resources/assets/computercraft/lua/rom/programs/advanced/multishell.lua
@@ -1,3 +1,21 @@
+--- Multishell allows multiple programs to be run at the same time.
+--
+-- When multiple programs are running, it displays a tab bar at the top of the
+-- screen, which allows you to switch between programs. New programs can be
+-- launched using the `fg` or `bg` programs, or using the @{shell.openTab} and
+-- @{multishell.launch} functions.
+--
+-- Each process is identified by its ID, which corresponds to its position in
+-- the tab list. As tabs may be opened and closed, this ID is _not_ constant
+-- over a program's run. As such, be careful not to use stale IDs.
+--
+-- As with @{shell}, @{multishell} is not a "true" API. Instead, it is a
+-- standard program, which launches a shell and injects its API into the shell's
+-- environment. This API is not available in the global environment, and so is
+-- not available to @{os.loadAPI|APIs}.
+--
+-- @module[module] multishell
+
 local expect = dofile("rom/modules/main/cc/expect.lua").expect
 
 -- Setup process switching
@@ -190,12 +208,26 @@ local function setMenuVisible(bVis)
     end
 end
 
-local multishell = {}
+local multishell = {} --- @export
 
+--- Get the currently visible process. This will be the one selected on
+-- the tab bar.
+--
+-- Note, this is different to @{getCurrent}, which returns the process which is
+-- currently executing.
+--
+-- @treturn number The currently visible process's index.
+-- @see setFocus
 function multishell.getFocus()
     return nCurrentProcess
 end
 
+--- Change the currently visible process.
+--
+-- @tparam number n The process index to switch to.
+-- @treturn boolean If the process was changed successfully. This will
+-- return @{false} if there is no process with this id.
+-- @see getFocus
 function multishell.setFocus(n)
     expect(1, n, "number")
     if n >= 1 and n <= #tProcesses then
@@ -206,6 +238,13 @@ function multishell.setFocus(n)
     return false
 end
 
+--- Get the title of the given tab.
+--
+-- This starts as the name of the program, but may be changed using
+-- @{multishell.setTitle}.
+-- @tparam number n The process index.
+-- @treturn string|nil The current process title, or @{nil} if the
+-- process doesn't exist.
 function multishell.getTitle(n)
     expect(1, n, "number")
     if n >= 1 and n <= #tProcesses then
@@ -214,19 +253,45 @@ function multishell.getTitle(n)
     return nil
 end
 
-function multishell.setTitle(n, sTitle)
+--- Set the title of the given process.
+--
+-- @tparam number n The process index.
+-- @tparam string title The new process title.
+-- @see getTitle
+-- @usage Change the title of the current process
+--
+--     multishell.setTitle(multishell.getCurrent(), "Hello")
+function multishell.setTitle(n, title)
     expect(1, n, "number")
-    expect(2, sTitle, "string")
+    expect(2, title, "string")
     if n >= 1 and n <= #tProcesses then
-        setProcessTitle(n, sTitle)
+        setProcessTitle(n, title)
         redrawMenu()
     end
 end
 
+--- Get the index of the currently running process.
+--
+-- @treturn number The currently running process.
 function multishell.getCurrent()
     return nRunningProcess
 end
 
+--- Start a new process, with the given environment, program and arguments.
+--
+-- The returned process index is not constant over the program's run. It can be
+-- safely used immediately after launching (for instance, to update the title or
+-- switch to that tab). However, after your program has yielded, it may no
+-- longer be correct.
+--
+-- @tparam table tProgramEnv The environment to load the path under.
+-- @tparam string sProgramPath The path to the program to run.
+-- @param ... Additional arguments to pass to the program.
+-- @treturn number The index of the created process.
+-- @see os.run
+-- @usage Run the "hello" program, and set its title to "Hello!"
+--     local id = multishell.launch({}, "/rom/programs/fun/hello.lua")
+--     multishell.setTitle(id, "Hello!")
 function multishell.launch(tProgramEnv, sProgramPath, ...)
     expect(1, tProgramEnv, "table")
     expect(2, sProgramPath, "string")
@@ -238,6 +303,9 @@ function multishell.launch(tProgramEnv, sProgramPath, ...)
     return nResult
 end
 
+--- Get the number of processes within this multishell.
+--
+-- @treturn number The number of processes.
 function multishell.getCount()
     return #tProcesses
 end
diff --git a/src/main/resources/assets/computercraft/lua/rom/programs/shell.lua b/src/main/resources/assets/computercraft/lua/rom/programs/shell.lua
index 0d4b9f337..c36cc9abf 100644
--- a/src/main/resources/assets/computercraft/lua/rom/programs/shell.lua
+++ b/src/main/resources/assets/computercraft/lua/rom/programs/shell.lua
@@ -1,3 +1,15 @@
+--- The shell API provides access to CraftOS's command line interface.
+--
+-- It allows you to @{run|start programs}, @{setCompletionFunction|add
+-- completion for a program}, and much more.
+--
+-- @{shell} is not a "true" API. Instead, it is a standard program, which its
+-- API into the programs that it launches. This allows for multiple shells to
+-- run at the same time, but means that the API is not available in the global
+-- environment, and so is unavailable to other @{os.loadAPI|APIs}.
+--
+-- @module[module] shell
+
 local expect = dofile("rom/modules/main/cc/expect.lua").expect
 
 local multishell = multishell
@@ -15,7 +27,7 @@ local tAliases = parentShell and parentShell.aliases() or {}
 local tCompletionInfo = parentShell and parentShell.getCompletionInfo() or {}
 local tProgramStack = {}
 
-local shell = {}
+local shell = {} --- @export
 local function createShellEnv(sDir)
     local tEnv = {}
     tEnv.shell = shell
@@ -172,6 +184,18 @@ local function tokenise(...)
 end
 
 -- Install shell API
+
+--- Run a program with the supplied arguments.
+--
+-- All arguments are concatenated together and then parsed as a command line. As
+-- a result, `shell.run("program a b")` is the same as `shell.run("program",
+-- "a", "b")`.
+--
+-- @tparam string ... The program to run and its arguments.
+-- @treturn boolean Whether the program exited successfully.
+-- @usage Run `paint my-image` from within your program:
+--
+--     shell.run("paint", "my-image")
 function shell.run(...)
     local tWords = tokenise(...)
     local sCommand = tWords[1]
@@ -181,38 +205,83 @@ function shell.run(...)
     return false
 end
 
+--- Exit the current shell.
+--
+-- This does _not_ terminate your program, it simply makes the shell terminate
+-- after your program has finished. If this is the toplevel shell, then the
+-- computer will be shutdown.
 function shell.exit()
     bExit = true
 end
 
+--- Return the current working directory. This is what is displayed before the
+-- `> ` of the shell prompt, and is used by @{shell.resolve} to handle relative
+-- paths.
+--
+-- @treturn string The current working directory.
+-- @see setDir To change the working directory.
 function shell.dir()
     return sDir
 end
 
-function shell.setDir(_sDir)
-    expect(1, _sDir, "string")
-    if not fs.isDir(_sDir) then
+--- Set the current working directory.
+--
+-- @tparam string dir The new working directory.
+-- @throws If the path does not exist or is not a directory.
+-- @usage Set the working directory to "rom"
+--
+--     shell.setDir("rom")
+function shell.setDir(dir)
+    expect(1, dir, "string")
+    if not fs.isDir(dir) then
         error("Not a directory", 2)
     end
-    sDir = fs.combine(_sDir, "")
+    sDir = fs.combine(dir, "")
 end
 
+--- Set the path where programs are located.
+--
+-- The path is composed of a list of directory names in a string, each separated
+-- by a colon (`:`). On normal turtles will look in the current directory (`.`),
+-- `/rom/programs` and `/rom/programs/turtle` folder, making the path
+-- `.:/rom/programs:/rom/programs/turtle`.
+--
+-- @treturn string The current shell's path.
+-- @see setPath To change the current path.
 function shell.path()
     return sPath
 end
 
-function shell.setPath(_sPath)
-    expect(1, _sPath, "string")
-    sPath = _sPath
+--- Set the @{path|current program path}.
+--
+-- Be careful to prefix directories with a `/`. Otherwise they will be searched
+-- for from the @{shell.dir|current directory}, rather than the computer's root.
+--
+-- @tparam string path The new program path.
+function shell.setPath(path)
+    expect(1, path, "string")
+    sPath = path
 end
 
-function shell.resolve(_sPath)
-    expect(1, _sPath, "string")
-    local sStartChar = string.sub(_sPath, 1, 1)
+--- Resolve a relative path to an absolute path.
+--
+-- The @{fs} and @{io} APIs work using absolute paths, and so we must convert
+-- any paths relative to the @{dir|current directory} to absolute ones. This
+-- does nothing when the path starts with `/`.
+--
+-- @tparam string path The path to resolve.
+-- @usage Resolve `startup.lua` when in the `rom` folder.
+--
+--     shell.setDir("rom")
+--     print(shell.resolve("startup.lua"))
+--     -- => rom/startup.lua
+function shell.resolve(path)
+    expect(1, path, "string")
+    local sStartChar = string.sub(path, 1, 1)
     if sStartChar == "/" or sStartChar == "\\" then
-        return fs.combine("", _sPath)
+        return fs.combine("", path)
     else
-        return fs.combine(sDir, _sPath)
+        return fs.combine(sDir, path)
     end
 end
 
@@ -226,16 +295,25 @@ local function pathWithExtension(_sPath, _sExt)
     return _sPath .. "." .. _sExt
 end
 
-function shell.resolveProgram(_sCommand)
-    expect(1, _sCommand, "string")
+--- Resolve a program, using the @{path|program path} and list of @{aliases|aliases}.
+--
+-- @tparam string command The name of the program
+-- @treturn string|nil The absolute path to the program, or @{nil} if it could
+-- not be found.
+-- @usage Locate the `hello` program.
+--
+--      shell.resolveProgram("hello")
+--      -- => rom/programs/fun/hello.lua
+function shell.resolveProgram(command)
+    expect(1, command, "string")
     -- Substitute aliases firsts
-    if tAliases[_sCommand] ~= nil then
-        _sCommand = tAliases[_sCommand]
+    if tAliases[command] ~= nil then
+        command = tAliases[command]
     end
 
     -- If the path is a global path, use it directly
-    if _sCommand:find("/") or _sCommand:find("\\") then
-        local sPath = shell.resolve(_sCommand)
+    if command:find("/") or command:find("\\") then
+        local sPath = shell.resolve(command)
         if fs.exists(sPath) and not fs.isDir(sPath) then
             return sPath
         else
@@ -249,7 +327,7 @@ function shell.resolveProgram(_sCommand)
 
      -- Otherwise, look on the path variable
     for sPath in string.gmatch(sPath, "[^:]+") do
-        sPath = fs.combine(shell.resolve(sPath), _sCommand)
+        sPath = fs.combine(shell.resolve(sPath), command)
         if fs.exists(sPath) and not fs.isDir(sPath) then
             return sPath
         else
@@ -264,7 +342,15 @@ function shell.resolveProgram(_sCommand)
     return nil
 end
 
-function shell.programs(_bIncludeHidden)
+--- Return a list of all programs on the @{shell.path|path}.
+--
+-- @tparam[opt] boolean include_hidden Include hidden files. Namely, any which
+-- start with `.`.
+-- @treturn { string } A list of available programs.
+-- @usage textutils.tabulate(shell.programs())
+function shell.programs(include_hidden)
+    expect(1, include_hidden, "boolean", "nil")
+
     local tItems = {}
 
     -- Add programs from the path
@@ -275,7 +361,7 @@ function shell.programs(_bIncludeHidden)
             for n = 1, #tList do
                 local sFile = tList[n]
                 if not fs.isDir(fs.combine(sPath, sFile)) and
-                   (_bIncludeHidden or string.sub(sFile, 1, 1) ~= ".") then
+                   (include_hidden or string.sub(sFile, 1, 1) ~= ".") then
                     if #sFile > 4 and sFile:sub(-4) == ".lua" then
                         sFile = sFile:sub(1, -5)
                     end
@@ -351,6 +437,21 @@ local function completeProgramArgument(sProgram, nArgument, sPart, tPreviousPart
     return nil
 end
 
+--- Complete a shell command line.
+--
+-- This accepts an incomplete command, and completes the program name or
+-- arguments. For instance, `l` will be completed to `ls`, and `ls ro` will be
+-- completed to `ls rom/`.
+--
+-- Completion handlers for your program may be registered with
+-- @{shell.setCompletionFunction}.
+--
+-- @tparam string sLine The input to complete.
+-- @treturn { string }|nil The list of possible completions.
+-- @see read For more information about completion.
+-- @see shell.completeProgram
+-- @see shell.setCompletionFunction
+-- @see shell.getCompletionInfo
 function shell.complete(sLine)
     expect(1, sLine, "string")
     if #sLine > 0 then
@@ -388,23 +489,66 @@ function shell.complete(sLine)
     return nil
 end
 
-function shell.completeProgram(sProgram)
-    expect(1, sProgram, "string")
-    return completeProgram(sProgram)
+--- Complete the name of a program.
+--
+-- @tparam string program The name of a program to complete.
+-- @treturn { string } A list of possible completions.
+-- @see cc.shell.completion.program
+function shell.completeProgram(program)
+    expect(1, program, "string")
+    return completeProgram(program)
 end
 
-function shell.setCompletionFunction(sProgram, fnComplete)
-    expect(1, sProgram, "string")
-    expect(2, fnComplete, "function")
-    tCompletionInfo[sProgram] = {
-        fnComplete = fnComplete,
+--- Set the completion function for a program. When the program is entered on
+-- the command line, this program will be called to provide auto-complete
+-- information.
+--
+-- The completion function accepts four arguments:
+--
+--  1. The current shell. As completion functions are inherited, this is not
+--     guaranteed to be the shell you registered this function in.
+--  2. The index of the argument currently being completed.
+--  3. The current argument. This may be the empty string.
+--  4. A list of the previous arguments.
+--
+-- For instance, when completing `pastebin put rom/st` our pastebin completion
+-- function will receive the shell API, an index of 2, `rom/st` as the current
+-- argument, and a "previous" table of `{ "put" }`. This function may then wish
+-- to return a table containing `artup.lua`, indicating the entire command
+-- should be completed to `pastebin put rom/startup.lua`.
+--
+-- You completion entries may also be followed by a space, if you wish to
+-- indicate another argument is expected.
+--
+-- @tparam string program The path to the program. This should be an absolute path
+-- _without_ the leading `/`.
+-- @tparam function(shell: table, index: number, argument: string, previous: { string }):({ string }|nil) complete
+-- The completion function.
+-- @see cc.shell.completion Various utilities to help with writing completion functions.
+-- @see shell.complete
+-- @see read For more information about completion.
+function shell.setCompletionFunction(program, complete)
+    expect(1, program, "string")
+    expect(2, complete, "function")
+    tCompletionInfo[program] = {
+        fnComplete = complete,
     }
 end
 
+--- Get a table containing all completion functions.
+--
+-- This should only be needed when building custom shells. Use
+-- @{setCompletionFunction} to add a completion function.
+--
+-- @treturn { [string] = { fnComplete = function } } A table mapping the
+-- absolute path of programs, to their completion functions.
 function shell.getCompletionInfo()
     return tCompletionInfo
 end
 
+--- Returns the path to the currently running program.
+--
+-- @treturn string The absolute path to the running program.
 function shell.getRunningProgram()
     if #tProgramStack > 0 then
         return tProgramStack[#tProgramStack]
@@ -412,17 +556,38 @@ function shell.getRunningProgram()
     return nil
 end
 
-function shell.setAlias(_sCommand, _sProgram)
-    expect(1, _sCommand, "string")
-    expect(2, _sProgram, "string")
-    tAliases[_sCommand] = _sProgram
+--- Add an alias for a program.
+--
+-- @tparam string command The name of the alias to add.
+-- @tparam string program The name or path to the program.
+-- @usage Alias `vim` to the `edit` program
+--
+--     shell.setAlias("vim", "edit")
+function shell.setAlias(command, program)
+    expect(1, command, "string")
+    expect(2, program, "string")
+    tAliases[command] = program
 end
 
-function shell.clearAlias(_sCommand)
-    expect(1, _sCommand, "string")
-    tAliases[_sCommand] = nil
+--- Remove an alias.
+--
+-- @tparam string command The alias name to remove.
+function shell.clearAlias(command)
+    expect(1, command, "string")
+    tAliases[command] = nil
 end
 
+--- Get the current aliases for this shell.
+--
+-- Aliases are used to allow multiple commands to refer to a single program. For
+-- instance, the `list` program is aliased `dir` or `ls`. Running `ls`, `dir` or
+-- `list` in the shell will all run the `list` program.
+--
+-- @treturn { [string] = string } A table, where the keys are the names of
+-- aliases, and the values are the path to the program.
+-- @see shell.setAlias
+-- @see shell.resolveProgram This uses aliases when resolving a program name to
+-- an absolute path.
 function shell.aliases()
     -- Copy aliases
     local tCopy = {}
@@ -433,6 +598,20 @@ function shell.aliases()
 end
 
 if multishell then
+    --- Open a new @{multishell} tab running a command.
+    --
+    -- This behaves similarly to @{shell.run}, but instead returns the process
+    -- index.
+    --
+    -- This function is only available if the @{multishell} API is.
+    --
+    -- @tparam string ... The command line to run.
+    -- @see shell.run
+    -- @see multishell.launch
+    -- @usage Launch the Lua interpreter and switch to it.
+    --
+    --     local id = shell.openTab("lua")
+    --     shell.switchTab(id)
     function shell.openTab(...)
         local tWords = tokenise(...)
         local sCommand = tWords[1]
@@ -448,9 +627,13 @@ if multishell then
         end
     end
 
-    function shell.switchTab(nID)
-        expect(1, nID, "number")
-        multishell.setFocus(nID)
+    --- Switch to the @{multishell} tab with the given index.
+    --
+    -- @tparam number id The tab to switch to.
+    -- @see multishell.setFocus
+    function shell.switchTab(id)
+        expect(1, id, "number")
+        multishell.setFocus(id)
     end
 end